Koninklijk Nederlands Instituut voor Onderzoek der Zee

Chevalier, S.; Beauchard, O.; Teaca, A.; Begun, T.; Todorova, V.; Vandenbulcke, L.; Soetaert, K.; Grégoire, M. (2025). A macrozoobenthic data set of the Black Sea northwestern shelf. Scientific Data 12(1): 1-14. https://dx.doi.org/10.1038/s41597-025-05311-2, meer
Chevalier, S.; Beauchard, O.; Vandenbulcke, L.; Teaca, A.; Begun, T.; Todorova, V.; Soetaert, K.; Grégoire, M. (2025). Trait modeling to predict benthic functions and vulnerabilities across black sea seascapes. NPG Scientific Reports 15(1): 39076. https://dx.doi.org/10.1038/s41598-025-24508-4, meer
Cohen, J.; Twijnstra, R.H.; Schiller, J.; Montecinos Arismendi, G.; Reus, B.; Soetaert, K.; Timmermans, K. (2025). Global interfertility and heterosis in sugar kelp populations: a next step in sugar kelp breeding. J. Appl. Phycol. 37(2): 1213-1226. https://dx.doi.org/10.1007/s10811-025-03447-7, meer
Ding, X.; Soetaert, K.; Timmermans, K. (2025). Effect of temperature on growth and nitrate and phosphate uptake kinetics of juvenile Saccharina latissima sporophytes (Phaeophyceae). J. Appl. Phycol. 37(2): 1277-1287. https://dx.doi.org/10.1007/s10811-025-03475-3, meer
Hendriks, E.; Langedock, K.; van Duren, L.A.; Vanaverbeke, J.; Boone, W.; Soetaert, K. (2025). The impact of offshore wind turbine foundations on local hydrodynamics and stratification in the Southern North Sea. Front. Mar. Sci. 12: 1619577. https://dx.doi.org/10.3389/fmars.2025.1619577, meer
Kooistra, T.J.; Witbaard, R.; Bouma, T.; Pearson, S.; Bijleveld, A.I.; van der Heide, T.; Franken, O.; Soetaert, K. (2025). Coarsening coasts: quantifying sensitivity of benthic communities to sandification. Est., Coast. and Shelf Sci. 320: 109303. https://dx.doi.org/10.1016/j.ecss.2025.109303, meer
Kooistra, T.J.; Haarbosch, S.H.; Bosma, J.W.; Bouma, T.J.; van Prooijen, B.C.; Soetaert, K.; Pearson, S. (2025). How shells of different shapes affect current‐driven sand transport. JGR: Oceans 130(11): e2025JC023346. https://dx.doi.org/10.1029/2025jc023346, meer
Webb, T.J.; Beja, J.; Fernández Bejarano, S.J.; Ramos, E.; Sainz-Villegas, S.; Soetaert, K.; Stolte, W.; Troupin, C.; Weigel, B. (2025). Realising the potential of interoperable data products to improve the outlook for marine biodiversity: Lessons from the European marine observation and data network. Mar. Policy 173: 106578. https://dx.doi.org/10.1016/j.marpol.2024.106578, meer
Zhao, Y.; van Denderen, P.D.; Denéchère, R.; Falciani, J.E.; Jacobsen, N.S.; Konstantinopoulos, T.; Ottmann, D.; Petrik, C.M.; Soetaert, K.; Stock, C.A.; Andersen, K.H. (2025). FEISTY Fortran library and R package to integrate fish and fisheries with biogeochemical models. Methods Ecol. Evol. 16(1): 40-48. https://dx.doi.org/10.1111/2041-210x.14465, meer
Zhou, F.; Chen, Z.; Zhou, Z.; Cao, B.; Xu, L.; Liu, D.; Chen, R.; Soetaert, K.; Ge, J. (2025). Predicting massive floating macroalgal blooms in a regional sea. Environ. Model. Softw. 185: 106310. https://dx.doi.org/10.1016/j.envsoft.2024.106310, meer
Braeckman, U.; Soetaert, K.; Pasotti, F.; Quartino, M.L.; Vanreusel, A.; Saravia, L.A.; Schloss, I.R.; van Oevelen, D. (2024). Glacial melt impacts carbon flows in an Antarctic benthic food web. Front. Mar. Sci. 11: 1359597. https://dx.doi.org/10.3389/fmars.2024.1359597, meer
Chevalier, S.; Beauchard, O.; Teaca, A.; Soetaert, K.; Grégoire, M. (2024). Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea. Mar. Pollut. Bull. 207: 116857. https://dx.doi.org/10.1016/j.marpolbul.2024.116857, meer
Ghorai, B.; Tiano, J.C.; Molenaar, P.; Soetaert, K.; Keetels, G. (2024). Predicting the penetration depth and towing resistance of beam trawl fishing gears in sand. Mar. Georesour. Geotechnol. early view: 1-14. https://dx.doi.org/10.1080/1064119x.2024.2361009, meer
Rijnsdorp, A.D.; Boute, P.G.; Tiano, J.C.; de Haan, D.; Kraan, M.; Polet, H.; Schram, E.; Soetaert, M.; Steins, N.A.; Lankheet, M.J.; Soetaert, K. (2024). Electrotrawling can improve the sustainability of the bottom trawl fishery for sole: a review of the evidence. Rev. Fish Biol. Fish. 34(3): 959-993. https://dx.doi.org/10.1007/s11160-024-09867-x, meer
Tiano, J.; De Borger, E.; Paradis, S.; Bradshaw, C.; Morys, C.; Pusceddu, A.; Ennas, C.; Soetaert, K.; Puig, P.; Masque, P.; Sciberras, M. (2024). Global meta‐analysis of demersal fishing impacts on organic carbon and associated biogeochemistry. Fish Fish. 25(6): 936-950. https://dx.doi.org/10.1111/faf.12855, meer
van der Kaaden, A.-S.; Maier, S.R.; Chen, S.; De Clippele, L.H.; de Froe, E.; Gerkema, T.; van de Koppel, J.; Mienis, F.; Mohn, C.; Rietkerk, M.; Soetaert, K.; van Oevelen, D. (2024). Building your own mountain: the effects, limits, and drawbacks of cold-water coral ecosystem engineering. Biogeosciences 21(4): 973-992. https://dx.doi.org/10.5194/bg-21-973-2024, meer
van der Kaaden, A.-S.; van Oevelen, D.; Mohn, C.; Soetaert, K.; Rietkerk, M.; van de Koppel, J.; Gerkema, T. (2024). Resemblance of the global depth distribution of internal-tide generation and cold-water coral occurrences. Ocean Science Journal 20(2): 569-587. https://dx.doi.org/10.5194/os-20-569-2024, meer
Zhang, T.; Rios-Yunes, D.; Tian, B.; Liu, D.; Liu, Q.; Soetaert, K.; Zhou, Y.; van der Wal, D. (2024). Hyperspectral remote sensing of chlorophyll a and pheophorbide a pigments for macrobenthos mapping on an estuarine tidal flat. Ecol. Indic. 169: 112850. https://dx.doi.org/10.1016/j.ecolind.2024.112850, meer
Beauchard, O.; Bradshaw, C.; Bolam, S.; Tiano, J.C.; Garcia, C.; De Borger, E.; Laffargue, P.; Blomqvist, M.; Tsikopoulou, I.; Papadopoulou, N.K.; Smith, C.J.; Claes, J.; Soetaert, K.; Sciberras, M. (2023). Trawling-induced change in benthic effect trait composition – A multiple case study. Front. Mar. Sci. 10: 1303909. https://dx.doi.org/10.3389/fmars.2023.1303909, meer
Beauchard, O.; Thompson, M.S.A.; Ellingsen, K.E.; Piet, G.; Laffargue, P.; Soetaert, K. (2023). Assessing sea floor functional biodiversity and vulnerability. Mar. Ecol. Prog. Ser. 708: 21-43. https://dx.doi.org/10.3354/meps14270, meer
Horn, H.G.; van Rijswijk, P.; Soetaert, K.; van Oevelen, D. (2023). Drivers of spatial and temporal micro- and mesozooplankton dynamics in an estuary under strong anthropogenic influences (The Eastern Scheldt, Netherlands). J. Sea Res. 192: 102357. https://dx.doi.org/10.1016/j.seares.2023.102357, meer
Jiang, L.; Lu, X.; Wang, G.; Peng, M.; Wei, A.; Zhao, Y.; Soetaert, K. (2023). Unraveling seasonal and interannual nutrient variability shows exceptionally high human impact in eutrophic coastal waters. Limnol. Oceanogr. 68(5): 1161-1171. https://dx.doi.org/10.1002/lno.12336, meer
Mohn, C.; Hansen, J.L.S.; Carreiro-Silva, M.; Cunningham, S.A.; de Froe, E.; Dominguez-Carrió, C.; Gary, S.F.; Glud, R.N.; Göke, C.; Johnson, C.; Morato, T.; Friis Møller, E.; Rovelli, L.; Schulz, K.; Soetaert, K.; van der Kaaden, A.-S.; van Oevelen, D. (2023). Tidal to decadal scale hydrodynamics at two contrasting cold-water coral sites in the Northeast Atlantic. Prog. Oceanogr. 214: 103031. https://dx.doi.org/10.1016/j.pocean.2023.103031, meer
Poiesz, S.S.H.; Witte, J.IJ.; van der Meer, M.T.J.; de Jager, C.; Soetaert, K.; van der Heide, T.; van der Veer, H.W. (2023). Stomach content and stable isotopes illustrate large spatial similarity in the Wadden Sea fish food-web structure. Mar. Ecol. Prog. Ser. 707: 57-76. https://dx.doi.org/10.3354/meps14267, meer
Raimonet, M.; Ragueneau, O.; Soetaert, K.; Khalil, K.; Leynaert, A.; Michaud, E.; Moriceau, B.; Rabouille, C.; Memery, L. (2023). Benthic contribution to seasonal silica budgets in two macrotidal estuaries in North-Western France. Front. Mar. Sci. 10: 1269142. https://dx.doi.org/10.3389/fmars.2023.1269142, meer
Rios-Yunes, D.; Tiano, J.C.; van Oevelen, D.; van Dalen, J.; Soetaert, K. (2023). Annual biogeochemical cycling in intertidal sediments of a restored estuary reveals dependence of N, P, C and Si cycles to temperature and water column properties. Est., Coast. and Shelf Sci. 282: 108227. https://dx.doi.org/10.1016/j.ecss.2023.108227, meer
Rios-Yunes, D.; Tiano, J.C.; van Rijswijk, P.; De Borger, E.; van Oevelen, D.; Soetaert, K. (2023). Long-term changes in ecosystem functioning of a coastal bay expected from a shifting balance between intertidal and subtidal habitats. Cont. Shelf Res. 254: 104904. https://dx.doi.org/10.1016/j.csr.2022.104904, meer
Stuart-Lee, A.E.; Mortensen, J.; Juul-Pedersen, T.; Middelburg, J.J.; Soetaert, K.; Hopwood, M.J.; Engel, A.; Meire, L. (2023). Influence of glacier type on bloom phenology in two Southwest Greenland fjords. Est., Coast. and Shelf Sci. 284: 108271. https://dx.doi.org/10.1016/j.ecss.2023.108271, meer
van der Kaaden, A.-S.; Maier, S.R.; Siteur, K.; De Clippele, L.H.; van de Koppel, J.; Purkis, S.J.; Rietkerk, M.; Soetaert, K.; van Oevelen, D. (2023). Tiger reefs: Self‐organized regular patterns in deep‐sea cold‐water coral reefs. Ecosphere 14(10). https://dx.doi.org/10.1002/ecs2.4654, meer
Voet, H.; Soetaert, K.; Moens, T.; Bodé, S.; Boeckx, P.; Van Colen, C.; Vanaverbeke, J. (2023). N₂O production by mussels: Quantifying rates and pathways in current and future climate settings. Front. Mar. Sci. 10: 1101469. https://dx.doi.org/10.3389/fmars.2023.1101469, meer
Zhang, J.; Chen, X.; Soetaert, K.; Xu, Y. (2023). The relative roles of multiple drivers on benthic ciliate communities in an intertidal zone. Mar. Pollut. Bull. 187: 114510. https://dx.doi.org/10.1016/j.marpolbul.2022.114510, meer
de Froe, E.; Maier, S.R.; Horn, H.G.; Wolff, G.A.; Blackbird, S.; Mohn, C.; Schultz, M.; van der Kaaden, A.-S.; Cheng, C.; Wubben, E.; van Haastregt, B.; Møller, E.F.; Lavaleye, M.; Soetaert, K.; Reichart, G.-J.; van Oevelen, D. (2022). Hydrography and food distribution during a tidal cycle above a cold-water coral mound. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 189: 103854. https://dx.doi.org/10.1016/j.dsr.2022.103854, meer
Hendriks, E.; Van Prooijen, B.C.; Cheng, C.H.; Aarninkhof, S.G.J.; Winterwerp, J.C.; Soetaert, K.E. (2022). An explanatory model for the burial of fines in the sandy seabed of the southern North Sea. Mar. Geol. 454: 106953. https://dx.doi.org/10.1016/j.margeo.2022.106953, meer
Jiang, L,; Blommaert, L.; Jansen, H.M.; Broch, O.J.; Timmermans, K.R.; Soetaert, K. (2022). Carrying capacity of Saccharina latissima cultivation in a Dutch coastal bay: a modelling assessment. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 79(3): 709-721. https://dx.doi.org/10.1093/icesjms/fsac023, meer
Jiang, L.; Jansen, H.M.; Broch, O.J.; Timmermans, K.R.; Soetaert, K. (2022). Modelling spatial variability of cultivated Saccharina latissima in a Dutch coastal bay shows benefits of co-cultivation with shellfish. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 79(8): 2324-2335. https://dx.doi.org/10.1093/icesjms/fsac176, meer
Nmor, S.I.; Viollier, E.; Pastor, L.; Lansard, B.; Rabouille, C.; Soetaert, K. (2022). FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling. Geosci. Model Dev. 15(19): 7325-7351. https://dx.doi.org/10.5194/gmd-15-7325-2022, meer
Ait Ballagh, F.E.; Rabouille, C.; Andrieux-Loyer, F.; Soetaert, K.; Lansard, B.; Bombled, B.; Monvoisin, G.; Elkalay, K.; Khalil, K. (2021). Spatial variability of organic matter and phosphorus cycling in Rhône River prodelta sediments (NW Mediterranean Sea, France): a model-data approach. Est. Coast. 44: 1765-1789. https://dx.doi.org/10.1007/s12237-020-00889-9, meer
Cheng, C.; Borsje, B.W.; Beauchard, O.; O'Flynn, S.; Ysebaert, T.; Soetaert, K. (2021). Small‐scale macrobenthic community structure along asymmetrical sand waves in an underwater seascape. Mar. Ecol. (Berl.) 42(3): e12657. https://doi.org/10.1111/maec.12657, meer
Cheng, C.; de Smit, J.C.; Fivash, G.S.; Hulscher, S.J.M.H.; Borsje, B.; Soetaert, K. (2021). Sediment shell-content diminishes current-driven sand ripple development and migration. Earth Surface Dynamics 9(5): 1335-1346. https://dx.doi.org/10.5194/esurf-9-1335-2021, meer
De Borger, E.; Ivanov, E.; Capet, A.; Braeckman, U.; Vanaverbeke, J.; Grégoire, M.; Soetaert, K. (2021). Offshore windfarm footprint of sediment organic matter mineralization processes. Front. Mar. Sci. 8: 632243. https://dx.doi.org/10.3389/fmars.2021.632243, meer
De Borger, E.; Tiano, J.; Braeckman, U.; Rijnsdorp, A.D.; Soetaert, K. (2021). Impact of bottom trawling on sediment biogeochemistry: a modelling approach. Biogeosciences 18: 2539–2557. https://doi.org/10.5194/bg-18-2539-2021, meer
De Borger, E.; Braeckman, U.; Soetaert, K. (2021). Rapid organic matter cycling in North Sea sediments. Cont. Shelf Res. 214: 104327. https://dx.doi.org/10.1016/j.csr.2020.104327, meer
de Kluijver, A.; Bart, M.C.; van Oevelen, D.; de Goeij, J.M.; Leys, S.P.; Maier, S.R.; Maldonado, M.; Soetaert, K.; Verbiest, S.; Middelburg, J.J. (2021). An integrative model of carbon and nitrogen metabolism in a common deep-sea sponge (Geodia barretti). Front. Mar. Sci. 7: 596251. https://dx.doi.org/10.3389/fmars.2020.596251, meer
Fang, X.; Moens, T.; Knights, A.; Soetaert, K.; Van Colen, C. (2021). Allometric scaling of faunal-mediated ecosystem functioning: A case study on two bioturbators in contrasting sediments. Est., Coast. and Shelf Sci. 254: 107323. https://doi.org/10.1016/j.ecss.2021.107323, meer
Fang, X.; Cozzoli, F.; Smolders, S.; Knights, A.; Moens, T.; Soetaert, K.; Van Colen, C. (2021). Hindcasting ecosystem functioning change in an anthropogenized estuary: Implications for an era of global change. Front. Mar. Sci. 8: 747883. https://dx.doi.org/10.3389/fmars.2021.747833, meer
Fischer, F.C.; Hiki, K.; Soetaert, K.; Endo, S. (2021). Mind the exposure gaps—modeling chemical transport in sediment toxicity tests. Environ. Sci. Technol. 55(17): 11885-11893. https://dx.doi.org/10.1021/acs.est.1c03201, meer
Ivanov, E.; Capet, A.; De Borger, E.; Degraer, S.; Delhez, E.; Soetaert, K.; Vanaverbeke, J.; Grégoire, M. (2021). Offshore wind farm footprint on organic and mineral particle flux to the bottom. Front. Mar. Sci. 8: 631799. https://dx.doi.org/10.3389/fmars.2021.631799, meer
Maier, S.R.; Mienis, F.; de Froe, E.; Soetaert, K.; Lavaleye, M.; Duineveld, G.C.A.; Beauchard, O.; van der Kaaden, A.-S.; Koch, B.P.; van Oevelen, D. (2021). Reef communities associated with ‘dead’ cold-water coral framework drive resource retention and recycling in the deep sea. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 175: 103574. https://doi.org/10.1016/j.dsr.2021.103574, meer
Poiesz, S.S.H.; Witte, J.IJ.; van der Meer, M.T.J.; van der Veer, H.W.; Soetaert, K. (2021). Trophic structure and resource utilization of the coastal fish community in the western Wadden Sea: evidence from stable isotope data analysis. Mar. Ecol. Prog. Ser. 677: 115-128. https://dx.doi.org/10.3354/meps13855, meer
Seepma, S.Y.M.H.; Ruiz-Hernandez, S.E.; Nehrke, G.; Soetaert, K.; Philipse, A.P.; Kuipers, B.W.M.; Wolthers, M. (2021). Controlling CaCO₃ Particle Size with {Ca²⁺}:{CO₃^2–} Ratios in Aqueous Environments. Crystal Growth & Design 21(3): 1576-1590. https://doi.org/10.1021/acs.cgd.0c01403, meer
Stratmann, T.; Soetaert, K.; Kersken, D.; van Oevelen, D. (2021). Polymetallic nodules are essential for food-web integrity of a prospective deep-seabed mining area in Pacific abyssal plains. NPG Scientific Reports 11(1): 12238. https://doi.org/10.1038/s41598-021-91703-4, meer
Tiano, J.C.; De Borger, E.; O'Flynn, S.; Cheng, C.; van Oevelen, D.; Soetaert, K. (2021). Physical and electrical disturbance experiments uncover potential bottom fishing impacts on benthic ecosystem functioning. J. Exp. Mar. Biol. Ecol. 545: 151628. https://dx.doi.org/10.1016/j.jembe.2021.151628, meer
Toussaint, E.; De Borger, E.; Braeckman, U.; De Backer, A.; Soetaert, K.; Vanaverbeke, J. (2021). Faunal and environmental drivers of carbon and nitrogen cycling along a permeability gradient in shallow North Sea sediments. Sci. Total Environ. 767: 144994. https://dx.doi.org/10.1016/j.scitotenv.2021.144994, meer
van der Kaaden, A.-S.; Mohn, C.; Gerkema, T.; Maier, S.R.; de Froe, E.; van de Koppel, J.; Rietkerk, M.; Soetaert, K.; van Oevelen, D. (2021). Feedbacks between hydrodynamics and cold-water coral mound development. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 178: 103641. https://dx.doi.org/10.1016/j.dsr.2021.103641, meer
Webb, A.E.; de Bakker, D.M.; Soetaert, K.; da Costa, T.; van Heuven, S.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2021). Quantifying functional consequences of habitat degradation on a Caribbean coral reef. Biogeosciences 18(24): 6501-6516. https://dx.doi.org/10.5194/bg-18-6501-2021, meer
Weber, S.B.; Richardson, A.J.; Brown, J.; Bolton, M.; Clark, B.L.; Godley, B.J.; Leat, E.; Oppel, S.; Shearer, L.; Soetaert, K.E.R.; Weber, N.; Broderick, A.C. (2021). Direct evidence of a prey depletion “halo” surrounding a pelagic predator colony. Proc. Natl. Acad. Sci. U.S.A. 118(28): e2101325118. https://dx.doi.org/10.1073/pnas.2101325118, meer
Ait Ballagh; Rabouille, C.; Andrieux-Loyer; Soetaert, K.; Elkalay, K.; Khalil (2020). Spatio-temporal dynamics of sedimentary phosphorus along two temperate eutrophic estuaries: A data-modelling approach. Cont. Shelf Res. 193: 104037. https://dx.doi.org/10.1016/j.csr.2019.104037, meer
Cheng, C.; Soetaert, K.; Borsje, B.W. (2020). Sediment characteristics over asymmetrical tidal sand waves in the Dutch North Sea. J. Mar. Sci. Eng. 8(6): 409. https://dx.doi.org/10.3390/jmse8060409, meer
De Borger, E.; Tiano, J.C.; Braeckman, U.; Ysebaert, T.; Soetaert, K. (2020). Biological and biogeochemical methods for estimating bioirrigation: a case study in the Oosterschelde estuary. Biogeosciences 17(6): 1701-1715. https://dx.doi.org/10.5194/bg-17-1701-2020, meer
de Jonge, D.S.W.; Stratmann, T.; Lins, L.; Vanreusel, A.; Purser, A.; Marcon, Y.; Rodrigues, C.F.; Ravara, A.; Esquete, P.; Cunha, M.R.; Simon-Lledó, E.; van Breugel, P.; Sweetman, A.K.; Soetaert, K.; van Oevelen, D. (2020). Abyssal food-web model indicates faunal carbon flow recovery and impaired microbial loop 26 years after a sediment disturbance experiment. Prog. Oceanogr. 189: 102446. https://doi.org/10.1016/j.pocean.2020.102446, meer
Ivanov, E.; Capet, A.; Barth, A.; Delhez, E.J.M.; Soetaert, K.; Grégoire, M. (2020). Hydrodynamic variability in the Southern Bight of the North Sea in response to typical atmospheric and tidal regimes. Benefit of using a high resolution model. Ocean Modelling 154: 101682. https://dx.doi.org/10.1016/j.ocemod.2020.101682, meer
Jiang, L,; Gerkema, T.; Kromkamp, J.; van der Wal, D.; Carrasco de la Cruz, P.M.; Soetaert, K. (2020). Drivers of the spatial phytoplankton gradient in estuarine–coastal systems: generic implications of a case study in a Dutch tidal bay. Biogeosciences 17(16): 4135-4152. https://dx.doi.org/10.5194/bg-17-4135-2020, meer
Jiang, L.; Gerkema, T.; Idier, D.; Slangen, A.; Soetaert, K. (2020). Effects of sea-level rise on tides and sediment dynamics in a Dutch tidal bay. Ocean Sci. 16: 307-321. https://doi.org/10.5194/os-16-307-2020, meer
Luciano, G.; Soetaert, K.; Svoboda, R. (2020). Simulation and non-linear optimization of Šesták-Berggren kinetics. Journal of Non-Crystalline Solids 550: 120391. https://doi.org/10.1016/j.jnoncrysol.2020.120391, meer
Mestdagh, S.; Fang, X.; Soetaert, K.; Ysebaert, T.; Moens, T.; Van Colen, C. (2020). Seasonal variability in ecosystem functioning across estuarine gradients: The role of sediment communities and ecosystem processes. Mar. Environ. Res. 162: 105096. https://dx.doi.org/10.1016/j.marenvres.2020.105096, meer
Middelburg, J.J.; Soetaert, K.; Hagens, M. (2020). Ocean alkalinity, buffering and biogeochemical processes. Rev. Geophys. 58(3): e2019RG000681. https://doi.org/10.1029/2019rg000681, meer
Pilotto, F.; Kühn, I.; Adrian, R.; Alber, R.; Alignier, A.; Andrews, C.; Bäck, J.; Barbaro, L.; Beaumont, D.; Beenaerts, N.; Benham, S.; Boukal, D.S.; Bretagnolle, V.; Camatti, E.; Canullo, R.; Cardoso, P.G.; Ens, B.J.; Everaert, G.; Evtimova, V.; Feuchtmayr, H.; García-González, R.; Gómez García, D.; Grandin, U.; Gutowski, J.M.; Hadar, L.; Halada, L.; Halassy, M.; Hummel, H.; Huttunen, K.-L.; Jaroszewicz, B.; Jensen, T.C.; Kalivoda, H.; Schmidt, I.K.; Kröncke, I.; Leinonen, R.; Martinho, F.; Meesenburg, H.; Meyer, J.; Minerbi, S.; Monteith, D.; Nikolov, B.P.; Oro, D.; Ozoliņš, D.; Padedda, B.M.; Pallett, D.; Pansera, M.; Pardal, M.A.; Petriccione, B.; Pipan, T.; Pöyry, J.; Schäfer, S.M.; Schaub, M.; Schneider, S.C.; Skuja, A.; Soetaert, K.; Spriņģe, G.; Stanchev, R.; Stockan, J.A.; Stoll, S.; Sundqvist, L.; Thimonier, A.; Van Hoey, G.; Van Ryckegem, G.; Visser, M.E.; Vorhauser, S.; Haase, P. (2020). Meta-analysis of multidecadal biodiversity trends in Europe. Nature Comm. 11(1): 3486. https://dx.doi.org/10.1038/s41467-020-17171-y, meer
Poiesz, S.; van Leeuwen, A.; Soetaert, K.; Witte, J.IJ.; Zaat, D.S.C.; van der Veer, H.W. (2020). Is summer growth reduction related to feeding guild? A test for a benthic juvenile flatfish sole (Solea solea) in a temperate coastal area, the western Wadden Sea. Est., Coast. and Shelf Sci. 235: 106570. https://dx.doi.org/10.1016/j.ecss.2019.106570, meer
Ramalho, S.P.; Lins, L.; Soetaert, K.; Lampadariou, N.; Cunha, M.R.; Vanreusel, A.; Pape, E. (2020). Ecosystem functioning under the influence of bottom-trawling disturbance: An experimental approach and field observations from a continental slope area in the West Iberian Margin. Front. Mar. Sci. 7: 457. https://dx.doi.org/10.3389/fmars.2020.00457, meer
Schulz, K.; Soetaert, K.; Mohn, C.; Korte, L.F.; Mienis, F.; Duineveld, G.C.A.; van Oevelen, D. (2020). Linking large-scale circulation patterns to the distribution of cold water corals along the eastern Rockall Bank (northeast Atlantic). J. Mar. Syst. 212: 103456. https://dx.doi.org/10.1016/j.jmarsys.2020.103456, meer
Stratmann, T.; van Oevelen, D.; Martinez Arbizu, P.; Wei, C.L.; Liao, J.-X.; Cusson, M.; Scrosati, R.; Archambault, P.; Snelgrove, P.; Ramey-Balci, P.; Burd, B.J.; Kenchington, E.; Belley, R.; Soetaert, K. (2020). The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities. Scientific Data 7: 206. https://dx.doi.org/10.1038/s41597-020-0551-2, meer
Tiano, J.C.; van der Reijden, K.J.; O'Flynn, S.; Beauchard, O.; van der Ree, S.; van der Wees, J.; Ysebaert, T.; Soetaert, K. (2020). Experimental bottom trawling finds resilience in large-bodied infauna but vulnerability for epifauna and juveniles in the Frisian Front. Mar. Environ. Res. 159: 104964. https://dx.doi.org/10.1016/j.marenvres.2020.104964, meer
van der Kaaden, A.-S.; van Oevelen, D.; Rietkerk, M.; Soetaert, K.; van de Koppel, J. (2020). Spatial self-organization as a new perspective on cold-water coral mound development. Front. Mar. Sci. 7: article 631. https://dx.doi.org/10.3389/fmars.2020.00631, meer
Xu, Y.; Yao, S.; Soetaert, K.; Fan, X. (2020). Effects of salt marsh restoration on eukaryotic microbenthic communities in the Yangtze Estuary. Mar. Ecol. Prog. Ser. 638: 39-50. https://dx.doi.org/10.3354/meps13242, meer
Braeckman, U.; Pasotti, F.; Vázquez, S.; Zacher, K.; Hoffmann, R.; Elvert, M.; Marchant, H.; Buckner, C.; Quartino, M.L.; Mác Cormack, W.; Soetaert, K.; Wenzhöfer, F.; Vanreusel, A. (2019). Degradation of macroalgal detritus in shallow coastal Antarctic sediments. Limnol. Oceanogr. 64(4): 1423-1441. https://dx.doi.org/10.1002/lno.11125, meer
Cox, T.J.S.; Maris, T.; van Engeland, T.; Soetaert, K.; Meire, P. (2019). Critical transitions in suspended sediment dynamics in a temperate meso-tidal estuary. NPG Scientific Reports 9(1): 10 pp. https://dx.doi.org/10.1038/s41598-019-48978-5, meer
Fang, X.; Mestdagh, S.; Ysebaert, T.; Moens, T.; Soetaert, K.; Van Colen, C. (2019). Spatio-temporal variation in sediment ecosystem processes and roles of key biota in the Scheldt estuary. Est., Coast. and Shelf Sci. 222: 21-31. https://dx.doi.org/10.1016/j.ecss.2019.04.001, meer
Grenz, C.; Moreno, M.O.; Soetaert, K.; Denis, L.; Douillet, P.; Fichez, R. (2019). Spatio-temporal variability in benthic exchanges at the sediment-water interface of a shallow tropical coastal lagoon (south coast of Gulf of Mexico). Est., Coast. and Shelf Sci. 218: 368-380. https://doi.org/10.1016/j.ecss.2019.01.012, meer
Jiang, L.; Gerkema, T.; Wijsman, J.W.M.; Soetaert, K. (2019). Comparing physical and biological impacts on seston renewal in a tidal bay with extensive shellfish culture. J. Mar. Syst. 194: 102-110. https://doi.org/10.1016/j.jmarsys.2019.03.003, meer
Jiang, L.; Soetaert, K.; Gerkema, T. (2019). Decomposing the intra-annual variability of flushing characteristics in a tidal bay along the North Sea. J. Sea Res. 115: 101821. https://dx.doi.org/10.1016/j.seares.2019.101821, meer
Stratmann, T.; Soetaert, K.; Wei, C.L.; Lin, Y.-S.; Van Oevelen, D. (2019). The SCOC database, a large, open, and global database with sediment community oxygen consumption rates. Scientific Data 6: article number: 242. https://doi.org/10.1038/s41597-019-0259-3, meer
Tiano, J.C.; Witbaard, R.; Bergman, M.J.N.; van Rijswijk, P.; Tramper, A.; Van Oevelen, D.; Soetaert, K. (2019). Acute impacts of bottom trawl gears on benthic metabolism and nutrient cycling. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 76(6): 1917–1930. https://dx.doi.org/10.1093/icesjms/fsz060, meer
Damveld, J.H.; van der Reijden, K.J.; Cheng, C.; Koop, L.; Haaksma, L.R.; Walsh, C.A.J.; Soetaert, K.; Borsje, B.W.; Govers, L.L; Roos, P.C.; Olff, H.; Hulscher, S.J.M.H. (2018). Video transects reveal that tidal sand waves affect the spatial distribution of benthic organisms and sand ripples. Geophys. Res. Lett. 45(21): 11,837-11,846. https://dx.doi.org/10.1029/2018gl079858, meer
Husson, B.; Sarrazin, J.; van Oevelen, D.; Sarradin, P.-M.; Soetaert, K.; Menesguen, A. (2018). Modelling the interactions of the hydrothermal mussel Bathymodiolus azoricus with vent fluid. Ecol. Model. 377: 35-50. https://doi.org/10.1016/j.ecolmodel.2018.03.007, meer
Lessin, G.; Artioli, Y.; Almroth-Rosell, E.; Blackford, J.C.; Dale, A. W.; Glud, R.N.; Middelburg, J.J.; Pastres, R.; Queirós, A.M.; Rabouille, C.; Regnier, P.; Soetaert, K.; Solidoro, C.; Stephens, N.; Yakushev, E. (2018). Modelling marine sediment biogeochemistry: current knowledge gaps, challenges, and some methodological advice for advancement. Front. Mar. Sci. 5: 19. https://doi.org/10.3389/fmars.2018.00019, meer
Snelgrove, P.V.R.; Soetaert, K.; Solan, M.; Thrush, S.; Wei, C.L.; Danovaro, R.; Kitazato, H.; Ingole, B.; Norkko, A.; Parkes, R.J.; Volkenborn, N. (2018). Global carbon cycling on a heterogeneous seafloor. Trends Ecol. Evol. 33(2): 96-105. https://doi.org/10.1016/j.tree.2017.11.004, meer
van Oevelen, D.; Duineveld, G.; Lavaleye, M.S.S.; Kutti, T.; Soetaert, K. (2018). Trophic structure of cold-water coral communities revealed from the analysis of tissue isotopes and fatty acid composition. Mar. Biol. Res. 14(3): 287-306. https://doi.org/10.1080/17451000.2017.1398404, meer
Cox, T.J.S.; van Beusekom, J.E.E.; Soetaert, K. (2017). Tune in on 11.57 µHz and listen to primary production. Biogeosciences 14(22): 5271-5280. https://dx.doi.org/10.5194/bg-14-5271-2017, meer
Geerts, L.; Cox, T.J.S.; Maris, T.; Wolfstein, K.; Meire, P.; Soetaert, K. (2017). Substrate origin and morphology differentially determine oxygen dynamics in two major European estuaries, the Elbe and the Schelde. Est., Coast. and Shelf Sci. 191: 157-170. https://dx.doi.org/10.1016/j.ecss.2017.04.009, meer
Holding, J.M.; Duarte, C.M.; Delgado-Huertas, A.; Soetaert, K.; Vonk, J.E.; Agusti, S.; Wassmann, P.; Middelburg, J. (2017). Autochthonous and allochthonous contributions of organic carbon to microbial food webs in Svalbard fjords. Limnol. Oceanogr. 62(3): 1307-1323. https://dx.doi.org/10.1002/lno.10526, meer
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the southern North Sea. Est., Coast. and Shelf Sci. 188: 1-11. https://dx.doi.org/10.1016/j.ecss.2017.02.002, meer
Maugendre, L.; Gattuso, J.-P.; de Kluijver, A.; Soetaert, K.; van Oevelen, D.; Middelburg, J.J.; Gazeau, F. (2017). Carbon-13 labelling shows no effect of ocean acidification on carbon transfer in Mediterranean plankton communities. Est., Coast. and Shelf Sci. 186(Part A): 100-111. dx.doi.org/10.1016/j.ecss.2015.12.018, meer
Schwarz, C.; Cox, T.; van Engeland, T.; van Oevelen, D.; van Belzen, J.; van de Koppel, J.; Soetaert, K.; Bouma, T.J.; Meire, P.; Temmerman, S. (2017). Field estimates of floc dynamics and settling velocities in a tidal creek with significant along-channel gradients in velocity and SPM. Est., Coast. and Shelf Sci. 197: 221-235. https://dx.doi.org/10.1016/j.ecss.2017.08.041, meer
Capet, A.; Meysman, Filip; Akoumianaki, I.; Soetaert, K.; Grégoire, M. (2016). Integrating sediment biogeochemistry into 3D oceanic models: a study of benthic-pelagic coupling in the Black Sea. Ocean Modelling 101: 83-100. dx.doi.org/10.1016/j.ocemod.2016.03.006, meer
De Smet, B.; van Oevelen, D.; Vincx, M.; Vanaverbeke, J.; Soetaert, K. (2016). Lanice conchilega structures carbon flows in soft-bottom intertidal areas. Mar. Ecol. Prog. Ser. 552: 47-60. http://dx.doi.org/10.3354/meps11747, meer
De Smet, B.; Braeckman, U.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2016). Predator effects on the feeding and bioirrigation activity of ecosystem-engineered Lanice conchilega reefs. J. Exp. Mar. Biol. Ecol. 475: 31-37. http://dx.doi.org/10.1016/j.jembe.2015.11.005, meer
Soetaert, K.; Mohn, C.; Rengstorf, A.; Grehan, A.; Van Oevelen, D. (2016). Ecosystem engineering creates a direct nutritional link between 600-m deep cold-water coral mounds and surface productivity. NPG Scientific Reports 6(35057 ): 9 pp. http://dx.doi.org/10.1038/srep35057, meer
Ulses, C.; Auger, P.-A.; Soetaert, K.; Marsaleix, P.; Diaz, F.; Coppola, L.; Herrmann, M.J.; Kessouri, F.; Estournel, C. (2016). Budget of organic carbon in the North-Western Mediterranean open sea over the period 2004–2008 using 3-D coupled physical-biogeochemical modeling. JGR: Oceans 121(9): 7026–7055. https://dx.doi.org/10.1002/2016JC011818, meer
Yevenes, M.A.; Soetaert, K.; Mannaerts, C.M. (2016). Tracing Nitrate-Nitrogen Sources and Modifications in a Stream Impacted by Various Land Uses, South Portugal. Water 8(9): 385. dx.doi.org/10.3390/w8090385 , meer
Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2015). Temporal dynamics in a shallow coastal benthic food web: Insights from fatty acid biomarkers and their stable isotopes. Mar. Environ. Res. 108: 55-68. http://dx.doi.org/10.1016/j.marenvres.2015.04.010, meer
Cox, T.J.S.; Maris, T.; Soetaert, K.; Kromkamp, J.C.; Meire, P.; Meysman, F.J.R. (2015). Estimating primary production from oxygen time series: A novel approach in the frequency domain. Limnol. Oceanogr., Methods 13(10): 529-552. dx.doi.org/10.1002/lom3.10046, meer
Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010, meer
Maugendre, L.; Gattuso, J.-P.; Louis, J.; de Kluijver, A.; Marro, S.; Soetaert, K.; Gazeau, F. (2015). Effect of ocean warming and acidification on a plankton community in the NW Mediterranean Sea. ICES J. Mar. Sci./J. Cons. int. Explor. Mer 72(6): 1744-1755. dx.doi.org/10.1093/icesjms/fsu161, meer
Meire, L.; Sogaard, D.H.; Mortensen, J.; Meysman, F.J.R.; Soetaert, K.; Arendt, K.E.; Juul-Pedersen, T.; Blicher, T.E.; Rysgaard, S. (2015). Glacial meltwater and primary production are drivers of strong CO₂ uptake in fjord and coastal waters adjacent to the Greenland Ice Sheet. Biogeosciences 12(8): 2347-2363. https://dx.doi.org/10.5194/bg-12-2347-2015, meer
Braeckman, U.; Van Colen, C.; Guilini, K.; Van Gansbeke, D.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2014). Empirical evidence reveals seasonally dependent reduction in nitrification in coastal sediments subjected to near future ocean acidification. PLoS One 9(10): e108153. https://dx.doi.org/10.1371/journal.pone.0108153, meer
Braeckman, U.; Yazdani Foshtomi, M.; Van Gansbeke, D.; Meysman, F.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2014). Variable importance of macrofaunal functional biodiversity for biogeochemical cycling in temperate coastal sediments. Ecosystems 17(4): 720-737. dx.doi.org/10.1007/s10021-014-9755-7, meer
Mohn, C.; Rengstorf, A.; White, M.; Mienis, F.; Soetaert, K.; Grehan, A.; Duineveld, G. (2014). Linking benthic hydrodynamics and cold-water coral occurrences: A high-resolution model study at three cold-water coral provinces in the NE Atlantic. Prog. Oceanogr. 122: 92-104. dx.doi.org/10.1016/j.pocean.2013.12.003, meer
Moneta, A.; Veuger, B.; van Rijswijk, P.; Meysman, F; Soetaert, K.; Middelburg, J.J. (2014). Dissolved inorganic and organic nitrogen uptake in the coastal North Sea: a seasonal study. Est., Coast. and Shelf Sci. 147: 78-86. http://dx.doi.org/10.1016/j.ecss.2014.05.022, meer
Adams Krumins, J.; van Oevelen, D.; Bezemer, T.M.; de Deyn, G.B.; Hol, W.H.G.; van Donk, E.; de Boer, W.; de Ruiter, P.C.; Middelburg, J.J.; Monroy, F.; Soetaert, K.; Thébault, E.; van de Koppel, J.; van Veen, J.A.; Viketoft, M.; van der Putten, W.H. (2013). Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function. BioScience 63(1): 35-42. dx.doi.org/10.1525/bio.2013.63.1.8, meer
Braeckman, U.; Vanaverbeke, J.; Vincx, M.; van Oevelen, D.; Soetaert, K. (2013). Meiofauna metabolism in suboxic sediments: currently overestimated. PLoS One 8(3): e59289. http://dx.doi.org/10.1371/journal.pone.0059289, meer
de Kluijver, A.; Soetaert, K.; Czerny, J.; Schulz, K.G.; Boxhammer, T.; Riebesell, U.; Middelburg, J.J. (2013). A ¹³C labelling study on carbon fluxes in Arctic plankton communities under elevated CO₂ levels. Biogeosciences 10(3): 1425-1440. dx.doi.org/10.5194/bg-10-1425-2013, meer
Koho, K.A.; Nierop, K.G.J.; Moodley, L.; Middelburg, J.J.; Pozzato, L.; Soetaert, K.; van der Plicht, J.; Reichart, G.J. (2013). Microbial bioavailability regulates organic matter preservation in marine sediments. Biogeosciences 10(2): 1131-1141. dx.doi.org/10.5194/bg-10-1131-2013, meer
Meire, L.; Soetaert, K.; Meysman, F.J.R. (2013). Impact of global change on coastal oxygen dynamics and risk of hypoxia. Biogeosciences 10(4): 2633-2653. https://dx.doi.org/10.5194/bg-10-2633-2013, meer
Morris, E.P.; Peralta, G.; Van Engeland, T.; Bouma, T.J.; Brun, F.G.; Lara, M.; Hendriks, I.E.; Benavente, J.; Soetaert, K.; Middelburg, J.J.; Perez-Llorens, J.L. (2013). The role of hydrodynamics in structuring in situ ammonium uptake within a submerged macrophyte community. Limnol. Oceanogr. 3: 210-224. http://dx.doi.org/10.1215/21573689-2397024, meer
Pape, E.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Vanreusel, A. (2013). Nematode feeding strategies and the fate of dissolved organic matter carbon in different deep-sea sedimentary environments. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 80: 94-110. http://dx.doi.org/10.1016/j.dsr.2013.05.018, meer
Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J (2013). Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone. Biogeosciences 10: 6879-6891. http://dx.doi.org/10.5194/bg-10-6879-2013, meer
Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J. (2013). Carbon processing at the deep-sea floor of the Arabian Sea oxygen minimum zone: A tracer approach. J. Sea Res. 78: 45-58. dx.doi.org/10.1016/j.seares.2013.01.002, meer
Provoost, P.; Braeckman, U.; Van Gansbeke, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J.; Vanaverbeke, J. (2013). Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea. Est., Coast. and Shelf Sci. 120: 1-11. http://dx.doi.org/10.1016/j.ecss.2013.01.008, meer
Tecchio, S.; van Oevelen, D.; Soetaert, K.; Navarro, J.; Ramírez-Llodra, E. (2013). Trophic Dynamics of Deep-Sea Megabenthos Are Mediated by Surface Productivity. PLoS One 8(5). dx.doi.org/10.1371/journal.pone.0063796, meer
Van Engeland, T.; Bouma, T.J.; Morris, E.P.; Brun, F.G.; Peralta, G.; Lara, M.; Hendriks, I.E.; van Rijswijk, P.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2013). Dissolved organic matter uptake in a temperate seagrass ecosystem. Mar. Ecol. Prog. Ser. 478: 87-100. dx.doi.org/10.3354/meps10183, meer
Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2012). Temporal dynamics in the diet of two marine polychaetes as inferred from fatty acid biomarkers. J. Sea Res. 68: 6-19. dx.doi.org/10.1016/j.seares.2011.11.003, meer
Dähnke, K.; Moneta, A.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2012). Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment. Biogeosciences 9(10): 4059-4070. http://dx.doi.org/10.5194/bg-9-4059-2012, meer
Evrard, V.; Huettel, M.; Cook, P.L.M.; Soetaert, K.; Heip, C.H.R.; Middelburg, J.J. (2012). Importance of phytodetritus and microphytobenthos for heterotrophs in a shallow subtidal sandy sediment. Mar. Ecol. Prog. Ser. 455: 13-31. dx.doi.org/10.3354/meps09676, meer
Mazzia, F.; Cash, J.R.; Soetaert, K. (2012). A Test Set for stiff Initial Value Problem Solvers in the open source software R: Package deTestSet. Journal of Computational and Applied Mathematics 236(16): 4119-4131. dx.doi.org/10.1016/j.cam.2012.03.014, meer
Soetaert, K; van Oevelen, D.; Sommer, S. (2012). Modelling the impact of Siboglinids on the biogeochemistry of the Captain Arutyunov mud volcano (Gulf of Cadiz). Biogeosciences 9(12): 5341-5352. dx.doi.org/10.5194/bg-9-5341-2012, meer
Soetaert, K.; Meysman, F. (2012). Reactive transport in aquatic ecosystems: Rapid model prototyping in the open source software R. Environ. Model. Softw. 32: 49-60. dx.doi.org/10.1016/j.envsoft.2011.08.011, meer
van Oevelen, D.; Soetaert, K.; Heip, C. (2012). Carbon flows in the benthic food web of the Porcupine Abyssal Plain: The(un)importance of labile detritus in supporting microbial and faunal carbon demands. Limnol. Oceanogr. 57(2): 645-664. dx.doi.org/10.4319/lo.2012.57.2.0645, meer
van Oevelen, D.; Soetaert, K.; Garcia, R.; de Stigter, H.C.; Cunha, M.R.; Pusceddu, A.; Danovaro, R.; Garcia, R. (2011). Canyon conditions impact carbon flows in food webs of three sections of the Nazare canyon. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 58(23-24): 2461-2476. dx.doi.org/10.1016/j.dsr2.2011.04.009, meer