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prof. dr. Middelburg, Jack
orcid.org/0000-0003-3601-9072, orcid
www.researcherid.com/rid/B-4951-2011, researcherid
www.uu.nl/staff/JBMMiddelburg, instituut homepage

Instituut  Top | Instituut | Publicaties | Projecten | Datasets 
    Universiteit Utrecht; Faculteit Geowetenschappen
    Institutioneel adres:
    Budapestlaan 4
    3584 CD Utrecht
JPG file

Vorig instituut  Top | Instituut | Publicaties | Projecten | Datasets 
    Koninklijk Nederlands Instituut voor Onderzoek der Zee; Estuarine and Delta Systems (EDS), meer
    Functie: Departementshoofd/Werkgroepleider


Projecten (16)  Top | Instituut | Publicaties | Projecten | Datasets 
  • Balans der heterotrofe en autotrofe processen in het schelde estuarium en impact op de koolstof- en stikstof-stromen
  • Biogas transfer in Estuaries
  • Biogeochemische cycli in open oceanen, kustzeeën en estuaria
  • Biogeochemische processen in estuariene systemen
  • COastal SAnds as Biocatalytical Filters
  • De functionele rol van het mariene macrobenthos in het metabolisme van de zeebodem.
  • De functionele rol van nematoden en foraminiferen in het benthische metabolisme
  • De rol van zoetwaterschorren in de vastlegging en omzettingen van stikstof in estuaria : een ecosysteem 15N labelings studie
  • Koolstof en stikstof cycli in de Westerschelde
  • Koolstof en stikstof cycli in de Westerschelde : het ontwikkelen van een geïntegreerde visie en de identificatie van de belangrijkste organismen in die cycli
  • Koolstof- en stikstofcycli in het Schelde-estuarium: naar een geïntegreerde visie en een identificatie van de belangrijke spelers
  • Nutrients Cycling and the Trophic Status of Coastal Ecosystems
  • The development of early diagenetic models
  • Understanding benthic, pelagic and air-borne ecosystem interactions in shallow coastal seas
  • Voedsel, zuurstof en bioturbatie: een experimentele studie van de structuur van meiofaunagemeenschappen
  • Zoetwaterschorren als "sinks" voor stikstof: dynamiek van het benthische compartiment en het onderzoek naar hun rol in estuariene stikstofretentie

Datasets (7)  Top | Instituut | Publicaties | Projecten | Datasets 
  • ALGBAC: 13C label transfer van algen naar bacteriën
  • Data set on pore-water composition and sediment-air fluxes in the Scheldt estuary at 9 stations with seasonal resolution. Intertidal sediments
  • Nitrogen cycling in the Westerschelde Estuary in 2003
  • Publication data from Jack Middelburg for BIOGEST (methane data)
  • Publication data from Jack Middelburg for BIOGEST (Nitrogen isotope tracing)
  • Publication data from Jack Middelburg for BIOGEST (nitrogen uptake data)
  • Publication data from Jack Middelburg for BIOGEST (particulate del13C, del15N, POC, PON, DOC, N2O and nitrogen uptake data)

Publicaties (252)  Top | Instituut | Publicaties | Projecten | Datasets 
    ( 186 peer reviewed ) opsplitsen
  • Peer reviewed article Abril, G.; Riou, S.A.; Etcheber, H.; Frankignoulle, M.; De Wit, R.; Middelburg, J.J. (2000). Transient, tidal time-scale, nitrogen transformations in an estuarine turbidity maximum-fluid mud system (The Gironde, south-west France). Est., Coast. and Shelf Sci. 50(5): 703-715. dx.doi.org/10.1006/ecss.1999.0598
  • Peer reviewed article Adams Krumins, J.; van Oevelen, D.; Bezemer, T.M.; de Deyn, G.B.; Hol, W.H.G.; van Donk, E.; de Boer, W.; de Ruiter, P.C.; Middelburg, J.J.; Monroy, F.; Soetaert, K.; Thébault, E.; van de Koppel, J.; van Veen, J.A.; Viketoft, M.; van der Putten, W.H. (2013). Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function. BioScience 63(1): 35-42. dx.doi.org/10.1525/bio.2013.63.1.8, meer
  • Peer reviewed article Andersson, J.H.; Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K.; Heip, C.H.R. (2004). Respiration patterns in the deep ocean. Geophys. Res. Lett. 31: L03304 (1-4). dx.doi.org/doi:10.1029/2003GL018756
  • Peer reviewed article Andersson, J.H.; Woulds, C.; Schwartz, M.; Cowie, G.L.; Levin, L.A.; Soetaert, K.; Middelburg, J.J. (2008). Short-term fate of phytodetritus in sediments across the Arabian Sea Oxygen Minimum Zone. Biogeosciences 5(1): 43-53
  • Peer reviewed article Andersson, M.G.I.; Van Rijswijk, P.; Middelburg, J.J. (2006). Uptake of dissolved inorganic nitrogen, urea and amino acids in the scheldt estuary: comparison of organic carbon and nitrogen uptake. Aquat. Microb. Ecol. 44(3): 303-315. hdl.handle.net/10.3354/ame044303
  • Peer reviewed article Andersson, M.G.I.; Brion, N.; Middelburg, J.J. (2006). Comparison of nitrifier activity versus growth in the Scheldt estuary - a turbid, tidal estuary in northern Europe. Aquat. Microb. Ecol. 42(2): 149-158. dx.doi.org/10.3354/ame042149
  • Aristegui, J.; Agusti, S.; Middelburg, J.J.; Duarte, C.M. (2005). Respiration in the mesopelagic and bathypelagic zones of the ocean, in: del Giorgio, P.A. et al. (Ed.) Respiration in aquatic ecosystems. pp. 181-205
  • Peer reviewed article Boschker, H.T.S.; Kromkamp, J.C.; Middelburg, J.J. (2005). Biomarker and carbon isotopic constraints on bacterial and algal community structure and functioning in a turbid, tidal estuary. Limnol. Oceanogr. 50(1): 70-80. dx.doi.org/10.4319/lo.2005.50.1.0070
  • Peer reviewed article Boschker, H.T.S.; Middelburg, J.J. (2002). Stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40: 85-95
  • Peer reviewed article Boschker, H.T.S.; Middelburg, J.J. (2002). Mini review: stable isotopes and biomarkers in microbial ecology. FEMS Microbiol. Ecol. 40(2): 85-95
  • Peer reviewed article Boudreau, B.P.; Meysman, F.; Middelburg, J.J. (2004). Multicomponent ionic diffusion in porewaters: coulombic effects revisited. Earth Planet. Sci. Lett. 222(2): 653- 666
  • Peer reviewed article Bouillon, S.; Middelburg, J.J.; Dehairs, F.A.; Borges, A.V.; Abril, G.; Flindt, M.R.; Ulomi, S.; Kristensen, E. (2007). Importance of intertidal sediment processes and porewater exchange on the water column biogeochemistry in a pristine mangrove creek (Ras Dege, Tanzania). Biogeosciences 4(3): 311-322
  • Peer reviewed article Bouillon, S.; Borges, A.V.; Castañeda-Moya, E.; Diele, K.; Dittmar, T.; Duke, N.C.; Kristensen, E.; Lee, S.Y.; Marchand, C.; Middelburg, J.J.; Rivera-Monroy, V.H.; Smith III, T.J.; Twilley, R.R. (2008). Mangrove production and carbon sinks: A revision of global budget estimates. Global Biogeochem. Cycles 22(2): GB2013. dx.doi.org/10.1029/2007GB003052
  • Peer reviewed article Bouillon, S.; Abril, G.; Borges, A.V.; Dehairs, F.; Govers, G.; Hughes, H.J.; Merckx, R.; Meysman, F.J.R.; Nyunja, J.; Osburn, C.; Middelburg, J.J. (2009). Distribution, origin and cycling of carbon in the Tana River (Kenya): a dry season basin-scale survey from headwaters to the delta. Biogeosciences 6(11): 2475-2493. hdl.handle.net/10.5194/bg-6-2475-2009
  • Braeckman, U.; Provoost, P.; Gribsholt, B.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2008). The role of macrofauna in the functioning of a sea floor: is there any seasonal, density or functional identity effect?, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium, 29 February 2008: book of abstracts. VLIZ Special Publication, 40: pp. 33
  • Braeckman, U.; Vincx, M.; Provoost, P.; Gribsholt, B.; Middelburg, J.; Soetaert, K.; Van Gansbeke, D.; Vanaverbeke, J. (2008). The role of macrofauna in the functioning of a sea floor: is there any seasonal, density or functional identity effect?, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 1
  • Braeckman, U.; Provoost, P.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2009). Does macrofauna affect the benthic processing of a settling phytoplankton bloom?, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 23
  • Peer reviewed article Braeckman, U.; Provoost, P.; Gribsholt, B.; Van Gansbeke, D.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2010). Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation. Mar. Ecol. Prog. Ser. 399: 173-186. dx.doi.org/10.3354/meps08336
  • Braeckman, U.; Provoost, P.; Gribsholt, B.; Van Gansbeke, D.; Middelburg, J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2011). Role of macrofauna functional traits and density in biogeochemical fluxes and bioturbation, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 25-50
  • Braeckman, U.; Provoost, P.; Sabbe, K.; Middelburg, J.J.; Soetaert, K.; Vincx, M.; Vanaverbeke, J. (2011). Temporal variation in macrobenthic diet as inferred from fatty acid biomarkers, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 103-130
  • Peer reviewed article Braeckman, U.; Provoost, P.; Moens, T.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2011). Biological vs. physical mixing effects on benthic food web dynamics. PLoS One 6(3): e18078. dx.doi.org/10.1371/journal.pone.0018078
  • Braeckman, U.; Provoost, P.; Moens, T.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2011). Biological vs. physical mixing effects on benthic food web dynamics, in: Braeckman, U. Macrobenthos structuring the sea floor: importance of its functional biodiversity for the benthic ecosystem = De structurerende rol van macrobenthos in de zeebodem: belang van de functionele biodiversiteit voor het benthische ecosysteem. pp. 77-101
  • Peer reviewed article Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2012). Temporal dynamics in the diet of two marine polychaetes as inferred from fatty acid biomarkers. J. Sea Res. 68: 6-19. dx.doi.org/10.1016/j.seares.2011.11.003, meer
  • Peer reviewed article Braeckman, U.; Provoost, P.; Sabbe, K.; Soetaert, K.; Middelburg, J.J.; Vincx, M.; Vanaverbeke, J. (2015). Temporal dynamics in a shallow coastal benthic food web: Insights from fatty acid biomarkers and their stable isotopes. Mar. Environ. Res. 108: 55-68. hdl.handle.net/10.1016/j.marenvres.2015.04.010, meer
  • Brion, N.; De Galan, S.; Billen, G.; Garnier, J.; Middelburg, J. (2002). The nitrogen cycle in the Seine and Scheldt estuaries, in: ECSA Local Meeting: ecological structures and functions in the Scheldt Estuary: from past to future, Antwerp, Belgium October 7-10, 2002: abstract book. pp. 24
  • Peer reviewed article Brouwer, G.M.; Duijnstee, I.A.P.; Hazeleger, J.H.; Rossi, F.; Lourens, L.J.; Middelburg, J.J; Wolthers, M. (2016). Diet shifts and population dynamics of estuarine foraminifera during ecosystem recovery after experimentally induced hypoxia crises. Est., Coast. and Shelf Sci. 170: 20-33. dx.doi.org/10.1016/j.ecss.2015.12.015, meer
  • Peer reviewed article Brouwer, M.G.M.; Wolthers, M.; Hazeleger, J.H.; Rossi, F; Lourens, L.J.; Middelburg, J.J.; Duijnstee, I.A.P. (2015). Differential response of intertidal Foraminifera to community recovery following experimentally induced hypoxia. Journal of Foraminiferal Research 45(3): 220-234. http://dx.doi.org/10.2113/gsjfr.45.3.220, meer
  • Peer reviewed article Christianen, M.J.A.; Middelburg, J.J.; Holthuijsen, S.J.; Jouta, J.; Compton, T.J.; van der Heide, T.; Piersma, T.; Sinninghe Damsté, J.S.; van der Veer, H.W.; Schouten, S.; Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology 98(6): 1498-1512. https://dx.doi.org/10.1002/ecy.1837, meer
  • Peer reviewed article Cook, P.L.M.; van Oevelen, D.; Soetaert, K.; Middelburg, J.J. (2009). Carbon and nitrogen cycling on intertidal mudflats of a temperate Australian estuary: 4. Inverse model analysis and synthesis. Mar. Ecol. Prog. Ser. 394: 35-48. dx.doi.org/10.3354/meps08270
  • Peer reviewed article Cox, T.J.S.; Maris, T.; Soetaert, K.; Conley, D.J.; Van Damme, S.; Meire, P.; Middelburg, J.J.; Vos, M.; Struyf, E. (2009). A macro-tidal freshwater ecosystem recovering from hypereutrophication: the Schelde case study. Biogeosciences 6(12): 2935-2948
  • Peer reviewed article Dähnke, K.; Moneta, A.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2012). Balance of assimilative and dissimilative nitrogen processes in a diatom-rich tidal flat sediment. Biogeosciences 9(10): 4059-4070. hdl.handle.net/10.5194/bg-9-4059-2012, meer
  • Peer reviewed article Dauwe, B.; Middelburg, J.J.; Van Rijswijk, P.; Sinke, J.; Herman, P.M.J.; Heip, C.H.R. (1999). Enzymatically hydrolyzable amino acids in North Sea sediments and their possible implication for sediment nutritional values. J. Mar. Res. 57: 109-134
  • Dauwe, B.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (1999). Particulate organic matter degradation in the ocean: changes in biochemical composition and reactivity are linked, in: Dauwe, B. Organic matter quality in North Sea sediments. pp. 113-120
  • Peer reviewed article Dauwe, B.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (1999). Linking diagenetic alteration of amino acids and bulk organic matter reactivity. Limnol. Oceanogr. 44(7): 1809-1814
  • Dauwe, B.; Middelburg, J.J.; Van Rijswijk, P.; Sinke, J.; Herman, P.M.J.; Heip, C.H.R. (1999). Enzymatically hydrolyzable amino acids in North Sea sediments and their possible implication for sediment nutritional values, in: Dauwe, B. Organic matter quality in North Sea sediments. : pp. 109-134
  • Peer reviewed article Dauwe, B.; Middelburg, J.J.; Herman, P.M.J. (2001). Effect of oxygen on the degradability of organic matter in subtidal and intertidal sediments of the North Sea area. Mar. Ecol. Prog. Ser. 215: 13-22
  • Peer reviewed article Dauwe, B.; Middelburg, J.J. (1998). Amino acids and hexosamines as indicators of organic matter degradation state in North Sea sediments. Limnol. Oceanogr. 43: 782-798
  • Dauwe, B.; Middelburg, J.J. (1998). Amino acids and hexosamines as indicators of organic matter degradation state in North Sea sediments, in: Dauwe, B. (1999). Organic matter quality in North Sea sediments. : pp. 782-798
  • Dauwe, B.; Middelburg, J.J.; Herman, P.M.J. (1999). Degradability of organic matter in subtidal and intertidal sediments of the North Sea area, in: Dauwe, B. Organic matter quality in North Sea sediments. pp. 63-87
  • Peer reviewed article de Bie, M.J.M.; Middelburg, J.J.; Starink, M.; Laanbroek, H.J. (2002). Factors controlling nitrous oxide at the microbial community and estuarine scale. Mar. Ecol. Prog. Ser. 240: 1-9. hdl.handle.net/10.3354/meps240001
  • Peer reviewed article de Goeij, J.M.; van Oevelen, D.; Vermeij, M.J.A.; Osinga , R.; Middelburg, J.J.; de Goeij, A.F.P.M.; Admiraal, W. (2013). Surviving in a marine desert: The sponge loop retains resources within coral reefs. Science (Wash.) 342(6154): 108-110. hdl.handle.net/10.1126/science.1241981, meer
  • Peer reviewed article de Kluijver, A.; Yu, J.L.; Houtekamer, M.; Middelburg, J.J.; Liu, Z.W. (2012). Cyanobacteria as a carbon source for zooplankton in eutrophic Lake Taihu, China, measured by 13C labeling and fatty acid biomarkers. Limnol. Oceanogr. 57(4): 1245-1254. dx.doi.org/10.4319/lo.2012.57.4.1245, meer
  • Peer reviewed article de Kluijver, A.; Soetaert, K.; Czerny, J.; Schulz, K.G.; Boxhammer, T.; Riebesell, U.; Middelburg, J.J. (2013). A 13C labelling study on carbon fluxes in Arctic plankton communities under elevated CO2 levels. Biogeosciences 10(3): 1425-1440. dx.doi.org/10.5194/bg-10-1425-2013, meer
  • Peer reviewed article de Kluijver, A.; Schoon, P.L.; Downing, J.A.; Schouten, S.; Middelburg, J.J. (2014). Stable carbon isotope biogeochemistry of lakes along a trophic gradient. Biogeosciences 11: 6265– 6276. dx.doi.org/10.5194/bg-11-6265-2014, meer
  • Peer reviewed article de Kluijver, A.; Ning, J.; Liu, Z.; Jeppesen, E.; Gulati, R.D.; Middelburg, J.J. (2015). Macrophytes and periphyton carbon subsidies to bacterioplankton and zooplankton in a shallow eutrophic lake in tropical China. Limnol. Oceanogr. 60: 375-385. dx.doi.org/10.1002/lno.10040, meer
  • De Laender, F.; Soetaert, K.; Janssen, C.R.; Middelburg, J.J. (2009). Stressor effects on aquatic food web functioning: methodology and case study, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 43
  • De Laender, F.; van Oevelen, D.; Frantsen, S.; Soetaert, K.; Janssen, C.R.; Middelburg, J.J. (2009). Seasonal PCB bioaccumulation in an Arctic marine ecosystem: a model analysis, in: Mees, J. et al. (Ed.) Book of abstracts: an overview of marine research in Belgium anno 2009. 10th VLIZ Young Scientists' Day. Special edition at the occasion of 10 years VLIZ. VLIZ Special Publication, 43: pp. 44
  • Peer reviewed article De Laender, F.; Soetaert, K.; De Schamphelaere, K.A.C.; Middelburg, J.J.; Janssen, C.R. (2010). Ecological significance of hazardous concentrations in a planktonic food web. Ecotoxicol. Environ. Saf. 73(3): 247-253. hdl.handle.net/10.1016/j.ecoenv.2009.12.008
  • Peer reviewed article De Laender, F.; van Oevelen, D.; Frantzen, S.; Middelburg, J.J.; Soetaert, K. (2010). Seasonal PCB bioaccumulation in an Arctic marine ecosystem: a model analysis incorporating lipid dynamics, food-web productivity and migration. Environ. Sci. Technol. 44(1): 356-361
  • Peer reviewed article de Lange, G.J.; Middelburg, J.J.; Poorter, R.P.; Shofiyah, S. (1989). Ferromanganese encrustations on the seabed west of Misool, eastern Indonesia. Neth. J. Sea Res. 24(4): 541-553
  • de Wilde, H.P.J.; Helder, W.; Van Raaphorst, W.; Middelburg, J.J.; Sinjewel, A.; Visser, R.J.W. (1999). Methane in the Rhine estuary, its lower tributaries, and adjacent coastal waters, in: de Wilde, H.P.J. Nitrous oxide and methane in marine systems. pp. 75-97
  • Peer reviewed article Dijkman, N.A.; Boschker, H.T.S.; Middelburg, J.J.; Kromkamp, J.C. (2009). Group-specific primary production based on stable-isotope labeling of phospholipid-derived fatty acids. Limnol. Oceanogr., Methods 7: 612-625. dx.doi.org/10.4319/lom.2009.7.612
  • Peer reviewed article Downing, J.A.; Cole, J.J.; Duarte, C.M.; Middelburg, J.J.; Melack, J.M.; Prairie, Y.T.; Kortelainen, P.; Striegl, R.G.; McDowell, W.H.; Tranvik, L.J. (2012). Global abundance and size distribution of streams and rivers. Inland Waters 2(4): 229-236. dx.doi.org/10.5268/IW-2.4.502, meer
  • Peer reviewed article Duarte, A.C.; Middelburg, J.J.; Caraco, N. (2005). Major role of marine vegetation on the oceanic carbon cycle. Biogeosciences 2(1): 1-8
  • Peer reviewed article Duce, R.A.; LaRoche, J.; Altieri, K.; Arrigo, K.R.; Baker, A.R.; Capone, D.G.; Cornell, S.; Dentener, F.; Galloway, J.N.; Ganeshram, R.S.; Geider, R.J.; Jickells, T.; Kuypers, M.M.; Langlois, R.; Liss, P.S.; Liu, S.M.; Middelburg, J.J.; Moore, C.M.; Nickovic, S.; Oschlies, A.; Pedersen, T.; Prospero, J.; Schlitzer, R.; Seitzinger, S.; Sorensen, L.L.; Uematsu, U.; Ulloa, O.; Voss, B.; Ward, B.; Zamora, L. (2008). Impacts of atmospheric anthropogenic nitrogen on the open ocean. Science (Wash.) 320(5878): 893-897
  • Peer reviewed article Evrard, V.; Huettel, M.; Cook, P.L.M.; Soetaert, K.; Heip, C.H.R.; Middelburg, J.J. (2012). Importance of phytodetritus and microphytobenthos for heterotrophs in a shallow subtidal sandy sediment. Mar. Ecol. Prog. Ser. 455: 13-31. dx.doi.org/10.3354/meps09676, meer
  • Peer reviewed article Ferro, I.; Van Nugteren, P.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Effect of macrofauna, oxygen exchange and particle reworking on iron and manganese sediment biogeochemistry: a laboratory experiment. Vie Milieu (1980) 53(4): 211-220
  • Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2004). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: European Conference on Marine Science and Ocean Technology. Celebrating European marine science: building the European research area: communicating marine science, 10th - 13th May 2004, Galway, Ireland: abstract book. pp. 118-119
  • Frankignoulle, M.; Borges, A.V.; Gazeau, F.; Delille, B.; Schiettecatte, L.-S.; Gattuso, J.P.; Rochelle-Newall, E.; González-Benítez, N.; Bonilla-Findji, O.; Pizay, M.D.; Wollast, R.; Vanderborcht, J.P.; Chou, L.; Loijens, M.; Folmer, I.; Middelburg, J.J.; Van den Meersche, K.; Boschker, H.T.S.; Veuger, B.; Duarte, C.M.; Barron, C.; Navarro, N.; Iversen, N.; Elliot, M.; Hemingway, K.L.; Burdon, D.; Campuzano-Guillen, F.J.; Allen, J. (2007). Nutrients cycling and the trophic status of coastal ecosystems (EUROTROPH), in: Cieslikiewicz, W. et al. (Ed.) Proceedings of the EurOCEAN 2004: European Conference on Marine Science & Ocean Technology: Celebrating European marine science; building the European research area; communicating marine science, Galway, Ireland, 10-13 May 2004. pp. 282-283
  • Peer reviewed article Frankignoulle, M.; Middelburg, J.J. (2002). Biogases in tidal European Estuaries: the BIOGEST project. Biogeochemistry 59(1-2): 1-4. dx.doi.org/10.1023/A:1015544311392
  • Peer reviewed article Frieling, J.; Gebhardt, H.; Huber, M.; Adekeye, O.A.; Akande, S.O.; Reichart, G.-J.; Middelburg, J.J.; Schouten, S.; Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-Eocene Thermal Maximum. Science Advances 3(3): e1600891. https://hdl.handle.net/10.1126/sciadv.1600891, meer
  • Peer reviewed article Gacia, E.; Duarte, C.M.; Middelburg, J. (2002). Carbon and nutrient deposition in a Mediterranean seagrass (Posidonia oceanica) meadow. Limnol. Oceanogr. 47: 23-32
  • Galaktionov, O.S.; Meysman, F.J.R.; Middelburg, J.J. (2003). Bio-irrigation induced by Arenicola marina: classical assumptions vs. numerical modeling. Berichte (Forsch.zent. Terramare) 12: 59-62
  • Galaktionov, O.S.; Meysman, F.J.R.; Middelburg, J.J. (2003). Bio-irrigation induced by Arenicola marina: classical assumptions vs. numerical modeling, in: Rullkötter, J. (Ed.) Biogeochemistry of tidal flats: Proceedings of a workshop at the Hanse Institute of Advanced Study, May 14-17, Delmenhorst, Germany. Abstract volume. Forschungszentrum Terramare Berichte, 12: pp. 59-62
  • Peer reviewed article Gattuso, J.P.; Dawson, N.A.; Duarte, C.M.; Middelburg, J. (2005). Patterns of publication effort in coastal biogeochemistry: a bibliometric survey (1971 to 2003). Mar. Ecol. Prog. Ser. 294: 9-22
  • Gazeau, F.; Borges, A.V.; Schiettecatte, L.-S.; Middelburg, J.; Frankignoulle, M.; Gattuso, J.P. (2004). Pelagic metabolism of the Scheldt estuary on an annual scale. Geophys. Res. Abstr. 6(05737): 2
  • Gazeau, F.; Borges, A.V.; Schiettecatte, L.-S.; Middelburg, J.; Frankignoulle, M.; Gattuso, J.P. (2004). Pelagic metabolism of the Scheldt estuary measured by the oxygen method on an annual scale, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 5 March 2004: book of abstracts. VLIZ Special Publication, 17: pp. 49
  • Peer reviewed article Gazeau, F.; Gattuso, J.P.; Middelburg, J.J.; Brion, N.; Schiettecatte, L.-S.; Frankignoulle, M.; Borges, A.V. (2005). Planktonic and whole system metabolism in a nutrient-rich estuary (the Scheldt estuary). Estuaries 28(6): 868-883. hdl.handle.net/10.1007/BF02696016
  • Gazeau, F.; Middelburg, J.J.; Loijens, M.; Vanderborght, J.-P.; Pizay, M.-D.; Gattuso, J.P. (2006). Phytoplanktonic primary production in a nutrient-rich estuary - comparison of methods. Geophys. Res. Abstr. 8(01682): 1
  • Peer reviewed article Gazeau, F.; Quiblier, C.; Jansen, J.M.; Gattuso, J.P.; Middelburg, J.J.; Heip, C.H.R. (2007). Impact of elevated CO2 on shellfish calcification. Geophys. Res. Lett. 34: L07603 (1-5)
  • Peer reviewed article Gazeau, F.; Gattuso, J.P.; Dawber, C.; Pronker, A.E.; Peene, F.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2010). Effect of ocean acidification on the early life stages of the blue mussel (Mytilus edulis). Biogeosciences 7: 2051-2060. hdl.handle.net/10.5194/bg-7-2051-2010
  • Peer reviewed article Gazeau, F.; Gattuso, J.P.; Greaves, M.; Elderfield, H.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2011). Effect of Carbonate Chemistry Alteration on the Early Embryonic Development of the Pacific Oyster (Crassostrea gigas). PLoS One 6(8): e23010; 1-8. dx.doi.org/10.1371/journal.pone.0023010, meer
  • Gazeau, F.; Middelburg, J.J.; Heip, C.H. (2011). Benthic calcification in the Dutch Coastal zone and effect on ocean acidification on the growth of commercially important bivalve species, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 108-116
  • Peer reviewed article Gazeau, F.; van Rijswijk, P.; Pozzato, L.; Middelburg, J.J. (2014). Impacts of Ocean Acidification on Sediment Processes in Shallow Waters of the Arctic Ocean. PLoS One 9(4): e94068. dx.doi.org/10.1371/journal.pone.0094068, meer
  • Peer reviewed article Gribsholt, B.; Boschker, H.T.S.; Struyf, E.; Andersson, M.; Tramper, A.; De Brabandere, L.; Van Damme, S.; Brion, N.; Meire, P.; Dehairs, F.; Middelburg, J.J.; Heip, C.H.R. (2005). Nitrogen processing in a tidal freshwater marsh: a whole-ecosystem 15N labeling study. Limnol. Oceanogr. 50(6): 1945-1959. dx.doi.org/10.4319/lo.2005.50.6.1945
  • Peer reviewed article Gribsholt, B.; Struyf, E.; Tramper, A.; Andersson, M.G.I.; Brion, N.; De Brabandere, L.; Van Damme, S.; Meire, P.; Middelburg, J.J.; Dehairs, F.A.; Boschker, H.T.S. (2006). Ammonium transformation in a nitrogen-rich tidal freshwater marsh. Biogeochemistry 80(3): 289-298
  • Peer reviewed article Gribsholt, B.; Veuger, B.; Tramper, A.; Middelburg, J.J.; Boschker, H.T.S. (2009). Long-term 15N-nitrogen retention in tidal freshwater marsh sediment: elucidating the microbial contribution. Limnol. Oceanogr. 54(1): 13-22. dx.doi.org/10.4319/lo.2009.54.1.0013
  • Hagens, M.; Slomp, C.P.; Meysman, F.J.R.; Brenner, H.; Borges, A.V.; Middelburg, J.J. (2013). The influence of biogeochemical processes on the pH dynamics in the seasonally hypoxic saline Lake Grevelingen, The Netherlands, in: The 45th International Liège Colloquium on Ocean Dynamics. The variability of primary production in the ocean: from the synoptic to the global scale, Liège, Belgium, 13-17 May, 2013: Abstracts. pp. [1]
  • Peer reviewed article Hagens, M.; Slomp, C.P.; Meysman, F.J.R.; Seitaj, D.; Harlay, J.; Borges, A.V.; Middelburg, J.J. (2015). Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin. Biogeosciences 12(5): 1561-1583. dx.doi.org/10.5194/bg-12-1561-2015, meer
  • Heip, C.; Herman, P.; Middelburg, J.; Soetaert, K. (1998). Effects of physical impacts on estuarine ecosystems, in: ECSA 29 Symposium. Estuarine Research and Management in Developed and Developping countries: Joint ECSA and CERM symposium at the University of Port Elizabeth 13-17 July 1998. Abstract book. pp. 43
  • Peer reviewed article Heip, C.H.R.; Goosen, N.K.; Herman, P.M.J.; Kromkamp, J.; Middelburg, J.J.; Soetaert, K. (1995). Production and consumption of biological particles in temperate tidal estuaries. Oceanogr. Mar. Biol. Ann. Rev. 33: 1-149
  • Peer reviewed article Heip, C.H.R.; Duineveld, G.; Flach, E.; Graf, G.; Helder, W.; Herman, P.M.J.; Lavaleye, M.S.S.; Middelburg, J.J.; Pfannkuche, O.; Soetaert, K.; Soltwedel, T.; de Stiger, H.; Thomsen, L.; Vanaverbeke, J.; de Wilde, P. (2001). The role of the benthic biota in sedimentary metabolism and sediment-water exchange processes in the Goban Spur area (NE Atlantic). Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48(14-15): 3223-3243. dx.doi.org/10.1016/S0967-0645(01)00038-8
  • Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J.; Moodley, L.; Soetaert, K.; Ysebaert, T.J. (2005). The ecology of estuarine intertidal flats: the example of the Westerschelde, in: Wilson, J.G. (Ed.) The intertidal ecosystem: the value of Ireland’s shores. pp. 179-195
  • Heip, C.H.R.; Middelburg, J.J.; Philippart, C.J.M. (2011). Functioning of ecosystems at the land-ocean interface, in: Wolanski, E. et al. (Ed.) Treatise on Estuarine and Coastal Science: 7. Functioning ecosystems at the land-ocean interface. pp. 1-3. dx.doi.org/10.1016/B978-0-12-374711-2.00701-4
  • Peer reviewed article Heip, C.H.R.; Herman, P.M.J.; Middelburg, J. (2001). The coin has two sides. Mar. Ecol. Prog. Ser. 211: 308
  • Peer reviewed article Herman, P.M.J.; Middelburg, J.J.; van de Koppel, J.; Heip, C.H.R. (1999). Ecology of estuarine macrobenthos. Adv. Ecol. Res. 29: 195-240
  • Peer reviewed article Herman, P.M.J.; Middelburg, J.J.; Widdows, J.; Lucas, C.H.; Heip, C.H.R. (2000). Stable isotopes as trophic tracers: combining field sampling and manipulative labelling of food resources for macrobenthos. Mar. Ecol. Prog. Ser. 204: 79-92
  • Peer reviewed article Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R. (2001). Benthic community structure and sediment processes on an intertidal flat: results from the ECOFLAT project. Cont. Shelf Res. 21(18-19): 2055-2071. hdl.handle.net/10.1016/S0278-4343(01)00042-5
  • Peer reviewed article Herman, P.M.J.; Soetaert, K.; Middelburg, J.J.; Heip, C.H.R.; Lohse, L.; Epping, E.; Helder, W.; Antia, A.N.; Peinert, R. (2001). The seafloor as the ultimate sediment trap: using sediment properties to constrain benthic-pelagic exchange processes at the Goban Spur. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48: 3245-3264
  • Peer reviewed article Hofmann, A.F.; Soetaert, K.; Middelburg, J.J. (2008). Present nitrogen and carbon dynamics in the Scheldt estuary using a novel 1-D model. Biogeosciences 5(4): 981-1006
  • Peer reviewed article Hofmann, A.F.; Soetaert, K.; Middelburg, J.J. (2008). Nitrogen and carbon dynamics in the Scheldt estuary at the beginning of the 21st century - a modelling study. Biogeosci. Discuss. 5: 83-161
  • Peer reviewed article Hofmann, A.F.; Meysman, F.J.R.; Soetaert, K.; Middelburg, J.J. (2008). A step-by-step procedure for pH model construction in aquatic systems. Biogeosciences 5(1): 227-251
  • Peer reviewed article Hofmann, A.F.; Middelburg, J.J.; Soetaert, K.; Meysman, F.J.R. (2009). pH modelling in aquatic systems with time-variable acid-base dissociation constants applied to the turbid, tidal Scheldt estuary. Biogeosciences 6(8): 1539-1561. hdl.handle.net/10.5194/bg-6-1539-2009
  • Peer reviewed article Hofmann, A.F.; Meysman, F.J.R.; Soetaert, K.; Middelburg, J.J. (2009). Factors governing the pH in a heterotrophic, turbid, tidal estuary. Biogeosci. Discuss. 6: 197-240. dx.doi.org/10.5194/bgd-6-197-2009
  • Peer reviewed article Holding, J.M.; Duarte, C.M.; Delgado-Huertas, A.; Soetaert, K.; Vonk, J.E.; Agusti, S.; Wassmann, P.; Middelburg, J. (2017). Autochthonous and allochthonous contributions of organic carbon to microbial food webs in Svalbard fjords. Limnol. Oceanogr. 62(3): 1307-1323. https://dx.doi.org/10.1002/lno.10526, meer
  • Peer reviewed article Kim, J.H.; Schouten, S.; Rodrigo-Gámiz, M.; Rampen, S.W.; Marino, G.; Huguet, C.; Helmke, P.; Buscail, R.; Hopmans, E.C.; Pross, J.; Sangiorgi, F.; Middelburg, J.; Sinninghe Damsté, J.S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEX h 86 paleothermometer in the Mediterranean Sea. Geochim. Cosmochim. Acta 150: 125–141. dx.doi.org/10.1016/j.gca.2014.11.017, meer
  • Peer reviewed article Koho, K.A.; Nierop, K.G.J.; Moodley, L.; Middelburg, J.J.; Pozzato, L.; Soetaert, K.; van der Plicht, J.; Reichart, G.J. (2013). Microbial bioavailability regulates organic matter preservation in marine sediments. Biogeosciences 10(2): 1131-1141. dx.doi.org/10.5194/bg-10-1131-2013, meer
  • Kroeze, C.; Middelburg, J.J.; Leemans, R.; Escobar-Briones, E.; Fennel, W.; Glaser, M.; Harashima, A.; Liu, K.-K.; Meybeck, M. (2008). Integrating tools to assess changes in semi-enclosed marine systems, in: Urban Jr., E.R. et al. (Ed.) Watersheds, bays, and bounded seas: The science and management of semi-enclosed marine systems. Scientific Committee on Problems of the Environment (SCOPE) Series, 70: pp. 77-96
  • Peer reviewed article Kürten, B.; Frutos, I.; Struck, U.; Painting, S.J.; Polunin, N.V.C.; Middelburg, J.J. (2013). Trophodynamics and functional feeding groups of North Sea fauna: a combined stable isotope and fatty acid approach. Biogeochemistry 113(1-3): 189-212. dx.doi.org/10.1007/s10533-012-9701-8, meer
  • Peer reviewed article Kürten, B.; Painting, S.J.; Struck , U.; Polunin, N.V.C.; Middelburg, J.J. (2013). Tracking seasonal changes in North Sea zooplankton trophic dynamics using stable isotopes. Biogeochemistry 113(1-3): 167-187. dx.doi.org/10.1007/s10533-011-9630-y, meer
  • Peer reviewed article Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010, meer
  • Peer reviewed article Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the southern North Sea. Est., Coast. and Shelf Sci. 188: 1-11. https://dx.doi.org/10.1016/j.ecss.2017.02.002, meer
  • Madani, S.; Meysman, F.J.R.; Middelburg, J.J. (2003). Biogeochemical modelling of sediments from the Santa Barbara basin (California). Berichte (Forsch.zent. Terramare) 12: 89-90
  • Peer reviewed article Maugendre, L.; Gattuso, J.-P.; de Kluijver, A.; Soetaert, K.; van Oevelen, D.; Middelburg, J.J.; Gazeau, F. (2017). Carbon-13 labelling shows no effect of ocean acidification on carbon transfer in Mediterranean plankton communities. Est., Coast. and Shelf Sci. 186(Part A): 100-111. dx.doi.org/10.1016/j.ecss.2015.12.018, meer
  • Peer reviewed article Meysman, F.; Galaktionov, O.S.; Gribsholt, B.; Middelburg, J.J. (2006). Bioirrigation in permeable sediments: advective pore-water transport induced by burrow ventilation. Limnol. Oceanogr. 51(1): 142-156
  • Peer reviewed article Meysman, F.; Galaktionov, O.S.; Middelburg, J.J. (2005). Irrigation patterns in permeable sediments induced by burrow ventilation: a case study of Arenicola marina. Mar. Ecol. Prog. Ser. 303: 195-212
  • Peer reviewed article Meysman, F.; Middelburg, J.J. (2005). Acid-volatile sulfide (AVS) - a comment. Mar. Chem. 97(1-2): 206- 212
  • Meysman, F.J.R.; Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J. (2001). MEDIA: a modelling environment for surface sediment biogeochemistry, in: VLIZ Young Scientists' Day, Brugge, Belgium 23 February 2001: book of abstracts. VLIZ Special Publication, 1: pp. 50-51
  • Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2002). In the wake of Darwin: using ab-initio continuum mechanics to describe the influence of macro-organisms on sediments, in: Hassanizader, S.M. et al. Computational methods in water resources, vol. 1(1). Developments in Water Science, 47: pp. 587-593
  • Peer reviewed article Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Reactive transport in surface sediments: 2. Media: an object-oriented problem-solving environment for early diagenesis. Comput. Geosci. 29(3): 301-318
  • Peer reviewed article Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2003). Relations between local, nonlocal, discrete and continuous models of bioturbation. J. Mar. Res. 61: 391-410
  • Peer reviewed article Meysman, F.J.R.; Middelburg, J.J.; Herman, P.M.J.; Heip, C.H.R. (2003). Reactive transport in surface sediments: 1. Model complexity and software quality. Comput. Geosci. 29(3): 291-300
  • Meysman, F.J.R.; Galaktionov, O.S.; Madani, S.; Middelburg, J.J. (2005). Modelling biological interactions in aquatic sediments as coupled reactive transport, in: Kristensen, E. et al. (Ed.) Interactions between macro- and microorganisms in marine sediments. Coastal and Estuarine Studies, 60: pp. 359-388
  • Peer reviewed article Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2005). Modeling reactive transport in sediments subject to bioturbation and compaction. Geochim. Cosmochim. Acta 69(14): 3601-3617
  • Peer reviewed article Meysman, F.J.R.; Galaktionov, O.S.; Cook, P.L.M.; Janssen, F.; Huettel, M.; Middelburg, J.J. (2006). Quantifying biologically and physically induced flow and tracer dynamics in permeable sediments. Biogeosci. Discuss. 3: 1809-1858
  • Peer reviewed article Meysman, F.J.R.; Galaktionov, O.S.; Gribsholt, B.; Middelburg, J.J. (2006). Bio-irrigation in permeable sediments: an assessment of model complexity. J. Mar. Res. 64(4): 589-627
  • Peer reviewed article Meysman, F.J.R.; Malyuga, V.S.; Boudreau, B.P.; Middelburg, J.J. (2007). The influence of porosity gradients on mixing coefficients in sediments. Geochim. Cosmochim. Acta 71(4): 961-973
  • Meysman, F.J.R.; Boudreau, B.P.; Middelburg, J.J. (2003). New developments in the modelling of bioturbation in aquatic sediments: relations between local, non-local, discrete and continuous models. Berichte (Forsch.zent. Terramare) 12: 91-93
  • Peer reviewed article Meysman, F.J.R.; Middelburg, J.J.; Heip, C.H.R. (2006). Bioturbation: a fresh look at Darwin's last idea. Trends Ecol. Evol. 21(12): 688-695. dx.doi.org/10.1016/j.tree.2006.08.002
  • Peer reviewed article Middelburg, J. J.; Nieuwenhuize, J.; Slim, F. J.; Ohowa, B. (1996). Sediment biogeochemistry in an East African mangrove forest (Gazi Bay,Kenya). Biogeochemistry 34(3): 133-155
  • Peer reviewed article Middelburg, J.; Nieuwenhuize, J. (1998). Carbon and nitrogen stable isotopes in suspended matter and sediments from the Schelde Estuary. Mar. Chem. 60(3-4): 217-225. dx.doi.org/10.1016/S0304-4203(97)00104-7
  • Peer reviewed article Middelburg, J.J. (2015). Escape by dilution. Science (Wash.) 348(6232): 290. hdl.handle.net/10.1126/science.aaa9852
  • Peer reviewed article Middelburg, J.J.; de Lange, G.J.; van der Weijden, C.H.; Shofiyah, S. (1989). Sediment chemistry of Kau Bay, Halmahera (eastern Indonesia). Neth. J. Sea Res. 24(4): 607-613
  • Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Markusse, R.; Vlug, T.; Van der Nat, F.J.W.A. (1995). Nitrous oxide emissions from estuarine intertidal sediments, in: Heip, C.H.R. et al. (Ed.) Major biological processes in European tidal estuaries. Developments in Hydrobiology, 110: pp. 43-55
  • Middelburg, J.J.; Nieuwenhuize, J.; Markusse, R.; Ohowa, B. (1995). Some preliminary results on the biogeochemistry of mangrove sediments from Gazi Bay, in: Heip, C.H.R. et al. (Ed.) Monsoons and coastal ecosystems in Kenya. pp. 51-66
  • Peer reviewed article Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Markusse, R.; Vlug, T.; Van der Nat, F.J.W.A. (1995). Nitrous oxide emissions from estuarine intertidal sediments. Hydrobiologia 311(1-3): 43-55
  • Peer reviewed article Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Vlug, T. (1995). Carbon and nitrogen cycling in intertidal sediments near Doel, Scheldt Estuary. Hydrobiologia 311(1-3): 57-69
  • Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Vlug, T. (1995). Carbon and nitrogen cycling in intertidal sediments near Doel, Scheldt Estuary, in: Heip, C.H.R. et al. (Ed.) Major biological processes in European tidal estuaries. Developments in Hydrobiology, 110: pp. 57-69
  • Peer reviewed article Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Heip, C.H.R. (1996). Denitrification in marine sediments: a model study. Global Biogeochem. Cycles 10(4): 661-673
  • Peer reviewed article Middelburg, J.J.; Klaver, G.; Nieuwenhuize, J.; Wielemaker, A.; Van der Nat, F.J.W.A.; Vlug, T. (1996). Organic matter mineralization in intertidal sediments along an estuarine gradient. Mar. Ecol. Prog. Ser. 132: 157-168
  • Peer reviewed article Middelburg, J.J.; Nieuwenhuize, J.; van Breugel, P. (1999). Black carbon in marine sediments. Mar. Chem. 65(3-4): 245-252. hdl.handle.net/10.1016/S0304-4203(99)00005-5
  • Peer reviewed article Middelburg, J.J.; Barranguet, C.; Boschker, H.T.S.; Herman, P.M.J.; Moens, T.; Heip, C.H.R. (2000). The fate of intertidal microphytobenthos carbon: an in situ 13C-labeling study. Limnol. Oceanogr. 45(6): 1224-1234. hdl.handle.net/10.4319/lo.2000.45.6.1224
  • Peer reviewed article Middelburg, J.J.; Nieuwenhuize, J.; Iversen, N.; Høgh, N.; de Wilde, H.; Helder, W.; Seifert, R.; Christof, O. (2002). Methane distribution in European tidal estuaries. Biogeochemistry 59(1-2): 95-119. hdl.handle.net/10.1023/A:1015515130419
  • Middelburg, J.J.; de Bie, M.J.M.; Nieuwenhuize, J. (2002). Methane and nitrous oxide in tidal estuaries, in: ECSA Local Meeting: ecological structures and functions in the Scheldt Estuary: from past to future, Antwerp, Belgium October 7-10, 2002: abstract book. pp. 22
  • Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230
  • Middelburg, J.J.; Soetaert, K.; Herman, P.M.J.; Boschker, H.T.S.; Heip, C.H.R. (2004). Burial of nutrient in coastal sediments: the role of primary producers, in: Nielsen, S.L. et al. (Ed.) Estuarine nutrient cycling: the influence of primary producers: the fate of nutrients and biomass. Aquatic Ecology Series, 2: pp. 217-230
  • Middelburg, J.J.; Duarte, C.M.; Gattuso, J.P. (2005). Respiration in coastal benthic communities, in: del Giorgio, P.A. et al. (Ed.) Respiration in aquatic ecosystems. pp. 207-225
  • Middelburg, J.J.; Andersson, M.; Boschker, E.; Brion, N.; Dehairs, F.; Dijkman, N.; Kromkamp, J.C.; Soetaert, K. (2011). Carbon and nitrogen cycling in the Scheldt estuary: the major players, long-term changes and an integrated view, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 148-154
  • Peer reviewed article Middelburg, J.J.; Mueller, C.E.; Veuger, B.; Larsson, A.I.; Form, A.; van Oevelen, D. (2015). Discovery of symbiotic nitrogen fixation and chemoautotrophy in cold-water corals. NPG Scientific Reports 5(17962): 9 pp. hdl.handle.net/10.1038/srep17962, meer
  • Peer reviewed article Middelburg, J.J.; de Lange, G.J. (1989). The isolation of Kau Bay during the last glaciation: direct evidence from interstitial water chlorinity. Neth. J. Sea Res. 24(4): 615-622
  • Middelburg, J.J.; Herman, P.M.J. (2007). Organic matter processing in tidal estuaries, in: Goldberg, E.D. (Ed.) (1974). Marine chemistry. The sea: ideas and observations on progress in the study of the seas, 5: pp. 127-147. hdl.handle.net/10.1016/j.marchem.2006.02.007
  • Peer reviewed article Middelburg, J.J.; Meysman, F.J.R. (2007). Burial at sea. Science (Wash.) 316(5829): 1294-1295. dx.doi.org/10.1126/science.1144001
  • Peer reviewed article Middelburg, J.J.; Nieuwenhuize, J. (2000). Uptake of dissolved inorganic nitrogen in turbid, tidal estuaries. Mar. Ecol. Prog. Ser. 192: 79-88. hdl.handle.net/10.3354/meps192079
  • Peer reviewed article Middelburg, J.J.; Nieuwenhuize, J. (2000). Nitrogen uptake by heterotrophic bacteria and phytoplankton in the nitrate rich Thames estuary. Mar. Ecol. Prog. Ser. 203: 13-21
  • Peer reviewed article Middelburg, J.J.; Nieuwenhuize, J. (2001). Nitrogen isotope tracing of dissolved inorganic nitrogen behaviour in tidal estuaries. Est., Coast. and Shelf Sci. 53(3): 385-391. dx.doi.org/10.1006/ecss.2001.0805
  • Middelburg, J.J.; Soetaert, K. (2005). The role of sediments in shelf ecosystem dynamics, in: Robinson, A.R. et al. (Ed.) The global coastal ocean. Multiscale interdisciplinary processes. The sea: ideas and observations on progress in the study of the seas, 13: pp. 353-374
  • Peer reviewed article Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (1996). Evaluation of the nitrogen isotope-pairing method for measuring benthic denitrification: a simulation analysis. Limnol. Oceanogr. 41(8): 1839-1844
  • Peer reviewed article Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (1997). Empirical relationships for use in global diagenetic models. Deep Sea Res. (1977) 44(2): 327-344
  • Peer reviewed article Moens, T.; Luyten, C.; Middelburg, J.J.; Herman, P.M.J.; Vincx, M. (2002). Tracing organic matter sources of estuarine tidal flat nematodes with stable carbon isotopes. Mar. Ecol. Prog. Ser. 234: 127-137. dx.doi.org/10.3354/meps234127
  • Moens, T.; Moodley, L.; Steyaert, M.; Van Colen, C.; Van Oevelen, D.; Boschker, H.T.S.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K.; Ysebaert, T.; Vincx, M. (2011). The structure and functional roles of tidal flat meiobenthos, in: Heip, C. et al. (Ed.) Aspects of coastal research in contribution to LOICZ in the Netherlands and Flanders (2002-2010). LOICZ Research & Studies, 38: pp. 171-184
  • Peer reviewed article Moneta, A.; Veuger, B.; van Rijswijk, P.; Meysman, F; Soetaert, K.; Middelburg, J.J. (2014). Dissolved inorganic and organic nitrogen uptake in the coastal North Sea: a seasonal study. Est., Coast. and Shelf Sci. 147: 78-86. dx.doi.org/10.1016/j.ecss.2014.05.022. hdl.handle.net/10.1016/j.ecss.2014.05.022, meer
  • Peer reviewed article Moodley, L.; Herman, P.M. J.; Middelburg, J.J.; Heip, C.H.R. (1996). Comment on: Subsurface activity of benthic foraminifera. Mar. Ecol. Prog. Ser. 145(1-3): 303-304
  • Peer reviewed article Moodley, L.; Heip, C.H.R.; Middelburg, J.J. (1998). Benthic activity in sediments of the northwestern Adriatic Sea: sediment oxygen consumption, macro- and meiofauna dynamics. J. Sea Res. 40(3-4): 263-280. dx.doi.org/10.1016/S1385-1101(98)00026-4
  • Peer reviewed article Moodley, L.; Boschker, H.T.S.; Middelburg, J.J.; Pel, R.; Herman, P.M.J.; de Deckere, E.; Heip, C.H.R. (2000). Ecological significance of benthic foraminifera: 13C labelling experiments. Mar. Ecol. Prog. Ser. 202: 289-295
  • Peer reviewed article Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M.J.; Heip, C.H.R. (2002). Erratum: Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 239: 230
  • Peer reviewed article Moodley, L.; Middelburg, J.J.; Boschker, H.T.S.; Duineveld, G.C.A.; Pel, R.; Herman, P.M. J.; Heip, C.H.R. (2002). Bacteria and foraminifera: Key players in a short-term deep-sea benthic response to phytodetritus. Mar. Ecol. Prog. Ser. 236: 23-29
  • Peer reviewed article Moodley, L.; Middelburg, J.J.; Herman, P.M.J.; Soetaert, K.; de Lange, G.J. (2005). Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon-rich deposits. Geology (Boulder Colo.) 33(11): 889-892. hdl.handle.net/10.1130/G21731.1
  • Peer reviewed article Moodley, L.; Middelburg, J.J.; Soetaert, K.; Boschker, H.T.S.; Herman, P.M.J.; Heip, C.H.R. (2005). Similar rapid response to phytodetritus deposition in shallow and deep-sea sediments. J. Mar. Res. 63(2): 457-469
  • Peer reviewed article Moodley, L.; Steyaert, M.; Epping, E.; Middelburg, J.J.; Vincx, M.; van Avesaath, P.; Moens, T.; Soetaert, K. (2008). Biomass-specific respiration rates of benthic meiofauna: Demonstrating a novel oxygen micro-respiration system. J. Exp. Mar. Biol. Ecol. 357(1): 41-47. dx.doi.org/10.1016/j.jembe.2007.12.025
  • Peer reviewed article Moodley, L.; Nigam, R.; Ingole, B.; Babu, C.P.; Panchang, R.; Nanajkar, M.; Sivadas, S.; van Breugel, P.; van Ijzerloo, L.; Rutgers, R.; Heip, C.H.R.; Middelburg, J.J. (2011). Oxygen minimum seafloor ecological (mal) functioning. J. Exp. Mar. Biol. Ecol. 398(1-2): 91-100. dx.doi.org/10.1016/j.jembe.2010.12.015, meer
  • Peer reviewed article Morales, C.; Rogov, M.; Wierzbowski, H.; Ershova, V.; Suan, G; Adatte, T.; Föllmi, K.B.; Tegelaar, E.; Reichart, G.-J.; de Lange, G.J.; Middelburg, J.J.; van de Schootbrugge, B. (2017). Glendonites track methane seepage in Mesozoic polar seas. Geology (Boulder Colo.) 45(6): 503-506. https://doi.org/10.1130/G38967.1, meer
  • Peer reviewed article Morris, E.P.; Peralta, G.; Van Engeland, T.; Bouma, T.J.; Brun, F.G.; Lara, M.; Hendriks, I.E.; Benavente, J.; Soetaert, K.; Middelburg, J.J.; Perez-Llorens, J.L. (2013). The role of hydrodynamics in structuring in situ ammonium uptake within a submerged macrophyte community. Limnol. Oceanogr. 3: 210-224. hdl.handle.net/10.1215/21573689-2397024, meer
  • Peer reviewed article Mueller, C.E.; Lundälv, T.; Middelburg, J.J.; van Oevelen, D. (2013). The Symbiosis between Lophelia pertusa and Eunice norvegica Stimulates Coral Calcification and Worm Assimilation. PLoS One 8(3). dx.doi.org/10.1371/journal.pone.0058660, meer
  • Peer reviewed article Mueller, C.E.; Larsson, A.I.; Veuger, B.; Middelburg, J.J.; van Oevelen, D. (2014). Opportunistic feeding on various organic food sources by the cold-water coral Lophelia pertusa. Biogeosciences 11(1): 123-133. dx.doi.org/10.5194/bg-11-123-2014, meer
  • Peer reviewed article Oakes, J.M.; Eyre, B.D.; Middelburg, J.J. (2012). Transformation and fate of microphytobenthos carbon in subtropical shallow subtidal sands: A 13C-labeling study. Limnol. Oceanogr. 57(6): 1846-1856. dx.doi.org/10.4319/lo.2012.57.6.1846, meer
  • Peer reviewed article Pedrotti, M.L.; Fiorini, S.; Kerros, M.E.; Middelburg, J.J.; Gattuso, J.P. (2012). Variable production of transparent exopolymeric particles by haploid and diploid life stages of coccolithophores grown under different CO2 concentrations. J. Plankton Res. 34(5): 388-398. dx.doi.org/10.1093/plankt/fbs012, meer
  • Peer reviewed article Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J (2013). Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone. Biogeosciences 10: 6879-6891. hdl.handle.net/10.5194/bg-10-6879-2013, meer
  • Peer reviewed article Pozzato, L.; van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J. (2013). Carbon processing at the deep-sea floor of the Arabian Sea oxygen minimum zone: A tracer approach. J. Sea Res. 78: 45-58. dx.doi.org/10.1016/j.seares.2013.01.002, meer
  • Peer reviewed article Provoost, P.; van Heuven, S.; Soetaert, K.; Laane, R.W.P.M.; Middelburg, J.J. (2010). Seasonal and long-term changes in pH in the Dutch coastal zone. Biogeosciences 7: 3869-3878. dx.doi.org/10.5194/bg-7-3869-2010
  • Peer reviewed article Provoost, P.; Braeckman, U.; Van Gansbeke, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J.; Vanaverbeke, J. (2013). Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea. Est., Coast. and Shelf Sci. 120: 1-11. hdl.handle.net/10.1016/j.ecss.2013.01.008, meer
  • Peer reviewed article Quinn, G.; Fee, E.; Larsen, P.S.; Shumway, S.E.; Gili, J.-M.; Kiorboe, T.; Hagerman, L.; Beninger, P.; Tessier, A.; Duarte, C.M.; Raven, J.; Middelburg, J.J.; Lesser, M.; Grémare, A.; Cole, J.; Larsen, O.N.; Beukema, J.J.; Reise, K.; Canfield, D.; Kinne, O. (2000). The peer-review system: time for re-assessment? Mar. Ecol. Prog. Ser. 192: 305-313
  • Peer reviewed article Ralison, O.H.; Borges, A.V.; Dehairs, F.; Middelburg, J.J.; Bouillon, S. (2008). Carbon biogeochemistry of the Betsiboka estuary (north-western Madagascar). Org. Geochem. 39(12): 1649-1658. hdl.handle.net/10.1016/j.orggeochem.2008.01.010
  • Peer reviewed article Rochelle-Newall, E.; Pizay, M.D.; Middelburg, J.J.; Boschker, H.T.S.; Gattuso, J.P. (2004). Degradation of riverine dissolved organic matter by seawater bacteria. Aquat. Microb. Ecol. 37: 9-22
  • Rochelle-Newall, E.J.; Barrón, C.; Borges, A.V.; Duarte, C.M.; Frankignoulle, M.; Gazeau, F.; Middelburg, J.J.; Pizay, M.-D.; Thioulouse, J.; Gattuso, J.P. (2005). Community metabolism in three contrasting coastal ecosystems. Geophys. Res. Abstr. 7(09330): 1
  • Peer reviewed article Rochelle-Newall, E.J.; Winter, C.; Barrón, C.; Borges, A.V.; Duarte, C.M.; Elliott, M.; Frankignoulle, M.; Gazeau, F.; Middelburg, J.J.; Pizay, M.-D.; Gattuso, J.P. (2007). Artificial neural network analysis of factors controlling ecosystem metabolism in coastal systems. Ecol. Appl. 17(Supplement): S185-S196. hdl.handle.net/10.1890/05-1769.1
  • Peer reviewed article Rossi, F.; Herman, P.M.J.; Middelburg, J.J. (2004). Interspecific and intraspecific variation of δ13C and δ15N in deposit- and suspension-feeding bivalves (Macoma balthica and Cerastoderma edule): evidence of ontogenetic changes in feeding mode of Macoma balthica. Limnol. Oceanogr. 49(2): 408-414
  • Peer reviewed article Rossi, F.; Forster, R.M.; Montserrat, F.; Ponti, M.; Terlizzi, A.; Ysebaert, T.J.; Middelburg, J.J. (2007). Human trampling as short-term disturbance on intertidal mudflats: effects on macrofauna biodiversity and population dynamics of bivalves. Mar. Biol. (Berl.) 151(6): 2077-2090. dx.doi.org/10.1007/s00227-007-0641-0
  • Peer reviewed article Rossi, F.; Gribsholt, B.; Middelburg, J.J.; Heip, C.H.R. (2008). Context-dependent effects of suspension feeding on intertidal ecosystem functioning. Mar. Ecol. Prog. Ser. 354: 47-57. dx.doi.org/10.3354/meps07213
  • Peer reviewed article Rossi, F.; Gribsholt, B.; Gazeau, F.; Di Santo, V.; Middelburg, J.J. (2013). Complex Effects of Ecosystem Engineer Loss on Benthic Ecosystem Response to Detrital Macroalgae. PLoS One 8(6), meer
  • Peer reviewed article Schoon, P.L.; de Kluijver, A.; Middelburg, J.J.; Downing, J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2013). Influence of lake water pH and alkalinity on the distribution of coreand intact polar branched glycerol dialkyl glycerol tetraethers (GDGTs) in lakes. Org. Geochem. 60: 72-82. dx.doi.org/10.1016/j.orggeochem.2013.04.015, meer
  • Peer reviewed article Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R.; deStigter, H.S.; van Weering, T.C.E.; Epping, E.; Helder, W. (1996). Modeling 210Pb-derived mixing activity in ocean margin sediments: diffusive versus nonlocal mixing. J. Mar. Res. 54: 1207-1227
  • Peer reviewed article Soetaert, K.; Herman, P.M.J.; Middelburg, J.J. (1996). A model of early diagenetic processes from the shelf to abyssal depths. Geochim. Cosmochim. Acta 60(6): 1019-1040. hdl.handle.net/10.1016/0016-7037(96)00013-0
  • Peer reviewed article Soetaert, K.; Herman, P.M.J.; Middelburg, J.J. (1996). Dynamic response of deep-sea sediments to seasonal variations: a model. Limnol. Oceanogr. 41(8): 1651-1668. hdl.handle.net/10.4319/lo.1996.41.8.1651
  • Peer reviewed article Soetaert, K.; Vanaverbeke, J.; Heip, C.H.R.; Herman, P.M.J.; Middelburg, J.J.; Sandee, A.; Duineveld, G.C.A. (1997). Nematode distribution in ocean margin sediments of the Goban Spur (northeast Atlantic) in relation to sediment geochemistry. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 44(9-10): 1671-1683
  • Peer reviewed article Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R. (1998). Assessing organic matter mineralization, degradability and mixing rate in an ocean margin sediment (Northeast Atlantic) by diagenetic modeling. J. Mar. Res. 56(2): 519-534
  • Peer reviewed article Soetaert, K.; Middelburg, J.J.; Herman, P.M.J.; Buis, K. (2000). On the coupling of benthic and pelagic biogeochemical models. Earth-Sci. Rev. 51: 173-201
  • Peer reviewed article Soetaert, K.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R.; Smith, C.L.; Tett, P.; Wild-Allen, K. (2001). Numerical modelling of the shelf break ecosystem: reproducing benthic and pelagic measurements. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 48(14-15): 3141-3177
  • Soetaert, K.; Middelburg, J.; Wijsman, J.W.M.; Herman, P.M.J.; Heip, C.H.R. (2002). Ocean margin early diagenetic processes and models, in: Wefer, G. et al. (Ed.) Ocean margin systems. pp. 157-177
  • Peer reviewed article Soetaert, K.; Middelburg, J.J.; Heip, C.H.R.; Meire, P.; Van Damme, S.; Maris, T. (2006). Long-term change in dissolved inorganic nutrients in the heterotrophic Scheldt estuary (Belgium, The Netherlands). Limnol. Oceanogr. 51(1): 409-423. dx.doi.org/10.4319/lo.2006.51.1_part_2.0409
  • Peer reviewed article Soetaert, K.; Hofmann, A.F.; Middelburg, J.J.; Meysman, F.J.R.; Greenwood, J. (2007). The effect of biogeochemical processes on pH. Mar. Chem. 105(1-2): 30-51
  • Peer reviewed article Soetaert, K.; Middelburg, J.J. (2009). Modeling eutrophication and oligotrophication of shallow-water marine systems: the importance of sediments under stratified and well-mixed conditions. Hydrobiologia 629(1): 239-254. dx.doi.org/10.1007/s10750-009-9777-x
  • Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2005). Tidal marshes and biogenic silica recycling at the land-sea interface, in: Struyf, E. The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). pp. 75-97
  • Struyf, E.; Van Damme, S.; Gribsholt, B.; Middelburg, J.J.; Meire, P. (2005). Biogenic silica in freshwater marsh sediments and vegetation (Schelde estuary, Belgium), in: Struyf, E. The role of freshwater marshes in estuarine silica cycling (Scheldt estuary) = De rol van zoetwaterschorren in de estuariene siliciumcyclus (Schelde-estuarium). pp. 33-58
  • Struyf, E.; Meire, P.; Van Damme, S.; Middelburg, J. (2006). Zoetwaterschorren als siliciumbuffers in het Schelde-estuarium. Water : nieuwsbrief over het integraal waterbeheer in vlaanderen 24
  • Peer reviewed article Struyf, E.; Dausse, A.; Van Damme, S.; Bal, K.; Gribsholt, B.; Boschker, E.; Middelburg, J.; Meire, P. (2006). Tidal marshes and biogenic silica recycling at the land-sea interface. Limnol. Oceanogr. 51(2): 838-846. dx.doi.org/10.4319/lo.2006.51.2.0838
  • Peer reviewed article Struyf, E.; Van Damme, S.; Gribsholt, B.; Bal, K.; Beauchard, O.; Middelburg, J.J.; Meire, P. (2007). Phragmites australis and silica cycling in tidal wetlands. Aquat. Bot. 87(2): 134-140. dx.doi.org/10.1016/j.aquabot.2007.05.002
  • Peer reviewed article Svensson, E.; Freitas, V.; Schouten, S.; Middelburg, J.J.; van der Veer, H.W.; Sinninghe Damsté, J.S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. J. Exp. Mar. Biol. Ecol. 457: 173-179. dx.doi.org/10.1016/j.jembe.2014.04.014, meer
  • Peer reviewed article Svensson, E.; Schouten, S.; Stam, A.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Comm. Mass Spectrom. 29(23): 2263–2271. dx.doi.org/10.1002/rcm.7393, meer
  • Peer reviewed article Svensson, E.; Schouten, S.; Hopmans, E.C.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2016). Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals. PLoS One 11(1): e0146321. dx.doi.org/10.1371/journal.pone.0146321, meer
  • Peer reviewed article Tadonléké, R.D.; Pollet, T.; van Rijswijk, P.; Leberre, B.; Middelburg, J.J. (2016). Effects of oxygen loss on carbon processing and heterotrophic prokaryotes from an estuarine ecosystem: results from stable isotope probing and cytometry analyses. Est. Coast. 39(4): 992-1005. http://dx.doi.org/10.1007/s12237-015-0053-1, meer
  • Van Colen, C.; Vincx, M.; Montserrat, F.; Middelburg, J.; Herman, P.; Andersson, M.; Rossi, F.; Gribsholt, B.; Ysebaert, T. (2008). Benthic and biogeochemical recovery after and induced hypoxic event: the structuring role of macrofauna succession, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 2
  • Van Colen, C.; Montserrat, F.; Middelburg, J.J.; Herman, P.M.; Andersson, M.; Rossi, F.; Gribsholt, B.; Vincx, M.; Ysebaert, T.; Degraer, S. (2009). Restoration of estuarine tidal mudflat sediments after hypoxia, in: ASLO Aquatic Sciences Meeting 2009: A Cruise Through Nice Waters, 25-30 January 2009, Nice, France. pp. 272
  • Peer reviewed article Van Colen, C.; Rossi, F.; Montserrat, F.; Andersson, M.G.I.; Gribsholt, B.; Herman, P.M.J.; Degraer, S.; Vincx, M.; Ysebaert, T.; Middelburg, J.J,. (2012). Organism-sediment interactions govern post-hypoxia recovery of ecosystem functioning. PLoS One 7(11): e49795. hdl.handle.net/10.1371/journal.pone.0049795, meer
  • van den Heuvel-Greve, M.J.; van Duren, L.A.; Brasseur, S.M.; Middelburg, J.J.; Leonards, P.E.; Zabel, A.K.; Vethaak, A.D. (2009). A novel method in dietary studies using ecotoxicological data, in: ASLO Aquatic Sciences Meeting 2009: A Cruise Through Nice Waters, 25-30 January 2009, Nice, France. pp. 273
  • Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P. (2003). Coupling of the carbon and nitrogen metabolism of algae and bacteria: modelling a 13C pulse-chase experiment, in: Van den Meersche, K. Koppeling van koolstof- en stikstofmetabolisme van algen en bacteriën in een estuarien pelagisch ecosysteem: bepaling door modelleren van een pulse-chase experiment met 13C-labelling. pp. A1-A15
  • Van den Meersche, K.; Soetaert, K.; Middelburg, J.; Heip, C.H.R.; Vincx, M. (2004). The microbial food web in the estuarine water column: a link or a sink?, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 5 March 2004: book of abstracts. VLIZ Special Publication, 17: pp. 74
  • Peer reviewed article Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2004). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a 13C tracer experiment. Limnol. Oceanogr. 49(3): 862-878. dx.doi.org/10.4319/lo.2004.49.3.0862
  • Peer reviewed article Van den Meersche, K.; Soetaert, K.; Middelburg, J.J. (2008). A Bayesian Compositional Estimator for microbial taxonomy based on biomarkers. Limnol. Oceanogr., Methods 6: 190-199. dx.doi.org/10.4319/lom.2008.6.190
  • Peer reviewed article Van den Meersche, K.; Van Rijswijk, P.; Soetaert, K.; Middelburg, J.J. (2009). Autochthonous and allochthonous contributions to mesozooplankton diet in a tidal river and estuary: integrating carbon isotope and fatty acid constraints. Limnol. Oceanogr. 54(1): 62-74. https://dx.doi.org/10.4319/lo.2009.54.1.0062
  • Van den Meersche, K.; Soetaert, K.; Middelburg, J.J. (2009). A Bayesian Compositional Estimator for microbial taxonomy based on biomarkers, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 51-66
  • Van den Meersche, K.; Middelburg, J.J.; Soetaert, K.; Van Rijswijk, P.; Boschker, H.T.S.; Heip, C.H.R. (2009). Carbon-nitrogen coupling and algal-bacterial interactions during an experimental bloom: modeling a 13C tracer experiment, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 97-129
  • Van den Meersche, K.; Soetaert, K.; Dijkman, N.A.; Middelburg, J.J. (2009). Plankton dynamics in an estuarine plume: a 13C and 15N tracer study, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 131-160
  • Van den Meersche, K.; Van Rijswijk, P.; Soetaert, K.; Middelburg, J.J. (2009). Autochthonous and allochthonous contributions to mesozooplankton diet in a tidal river and estuary: integrating carbon isotope and fatty acid constraints, in: Van den Meersche, K. Carbon flows in the planktonic food web of temperate estuaries: a combined approach using stable isotopes, biomarkers and modeling. pp. 73-96
  • Peer reviewed article van der Weijden, C.H.; de Lange, G.J.; Middelburg, J.J.; van der Sloot, H.A.; Hoede, D.; Shofiyah, S. (1989). Geochemical characteristics of Kau Bay water. Neth. J. Sea Res. 24(4): 583-589
  • Peer reviewed article van Duinen, G.A.; Vermonden, K.; Bodelier, P.L.E.; Hendriks, A.J.; Leuven, R.S.E.W.; Middelburg, J.J.; van der Velde, G.; Verberk, W.C.E.P. (2013). Methane as a carbon source for the food web in raised bog pools. Freshwater Science 32(4): 1260–1272. https://hdl.handle.net/10.1899/12-121.1, meer
  • Peer reviewed article van Duyl, F.C.; Moodley, L.; Nieuwland, G.; van Ijzerloo, L.; van Soest, R.W.M.; Houtekamer, M.; Meesters, E.H.; Middelburg, J.J. (2011). Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Mar. Biol. (Berl.) 158(7): 1653-1666. dx.doi.org/10.1007/s00227-011-1681-z, meer
  • Peer reviewed article Van Engeland, T.; Bouma, T.J.; Morris, E.P.; Brun, F.G.; Peralta, G.; Lara, M.; Hendriks, I.E.; Soetaert, K.; Middelburg, J.J.; Middelburg, J.J. (2011). Potential uptake of dissolved organic matter by seagrasses and macroalgae. Mar. Ecol. Prog. Ser. 427: 71-81. hdl.handle.net/10.3354/meps09054
  • Peer reviewed article Van Engeland, T.; Bouma, T.J.; Morris, E.P.; Brun, F.G.; Peralta, G.; Lara, M.; Hendriks, I.E.; van Rijswijk, P.; Veuger, B.; Soetaert, K.; Middelburg, J.J. (2013). Dissolved organic matter uptake in a temperate seagrass ecosystem. Mar. Ecol. Prog. Ser. 478: 87-100. dx.doi.org/10.3354/meps10183, meer
  • Peer reviewed article Van Gaever, S.; Moodley, L.; Pasotti, F.; Houtekamer, M.; Middelburg, J.J.; Danovaro, R.; Vanreusel, A. (2009). Trophic specialisation of metazoan meiofauna at the Håkon Mosby Mud Volcano: fatty acid biomarker isotope evidence. Mar. Biol. (Berl.) 156(6): 1289-1296. dx.doi.org/10.1007/s00227-009-1170-9
  • Peer reviewed article Van Nugteren, P.; Moodley, L.; Brummer, G.-J.; Heip, C.H.R.; Herman, P.M. J.; Middelburg, J.J. (2009). Seafloor ecosystem functioning: the importance of organic matter priming. Mar. Biol. (Berl.) 156(11): 2277-2287
  • Peer reviewed article Van Nugteren, P.; Herman, P.M. J.; Moodley, L.; Middelburg, J.J.; Vos, M.; Heip, C.H.R. (2009). Spatial distribution of detrital resources determines the outcome of competition between bacteria and a facultative detritivorous worm. Limnol. Oceanogr. 54(5): 1413-1419
  • Peer reviewed article van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J.J. (2006). The trophic significance of bacterial carbon in a marine intertidal sediment: Results of an in situ stable isotope labeling study. Limnol. Oceanogr. 51(5): 2349-2359. hdl.handle.net/10.4319/lo.2006.51.5.2349
  • Peer reviewed article van Oevelen, D.; Middelburg, J.J.; Soetaert, K.; Moodley, L. (2006). The fate of bacterial carbon in an intertidal sediment: Modeling an in situ isotope tracer experiment. Limnol. Oceanogr. 51(3): 1302-1314. hdl.handle.net/10.4319/lo.2006.51.3.1302
  • Peer reviewed article van Oevelen, D.; Soetaert, K.; Middelburg, J.J.; Herman, P.M.J.; Moodley, L.; Hamels, I.; Moens, T.; Heip, C.H.R. (2006). Carbon flows through a benthic food web: integrating biomass, isotope and tracer data. J. Mar. Res. 64(3): 453-482. dx.doi.org/10.1357/002224006778189581
  • Peer reviewed article Van Oevelen, D.; Mueller, C.E.; Lundälv, T.; Middelburg, J.J. (2016). Food selectivity and processing by the cold-water coral Lophelia pertusa. Biogeosciences 13: 5789–5798. dx.doi.org/10.5194/bg-13-5789-2016, meer
  • Van Oostende, N.; Boschker, H.T.S.; Middelburg, J.J.; Vyverman, W.; Sabbe, K. (2009). Bacterial influence on the extracellular carbohydrate pool in experimental Emiliania huxleyi blooms, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 6 March 2009: book of abstracts. VLIZ Special Publication, 41: pp. 73
  • van Tussenbroek, B.I.; Vonk, J.A.; Stapel, J.; Erftemeijer, P.L.A.; Middelburg, J.J.; Zieman, J.C. (2006). The biology of Thalassia: paradigms and recent advances in research, in: Larkum, A.W.D. et al. (Ed.) Seagrasses: biology, ecology and conservation. pp. 409-439
  • Vandewiele, S.; Kayal, E.; van Oevelen, D.; Middelburg, J.J. (2007). An isotope dilution approach to assess the nutritional value of detritus. Netherlands Institute of Ecology (NIOO): Yerseke. 1 poster pp.
  • Vandewiele, S.; Kayal, E.; van Oevelen, D.; Middelburg, J.J. (2007). An isotope dilution approach to assess the nutritional value of detritus, in: Mees, J. et al. (Ed.) VLIZ Young Scientists' Day, Brugge, Belgium 2 March 2007: book of abstracts. VLIZ Special Publication, 39: pp. 67
  • Peer reviewed article Vasquez-Cardenas, D.; van de Vossenberg, J.; Polerecky, L.; Malkin, S.Y.; Schauer, R.; Hidalgo-Martinez, S.; Confurius-Guns, V.; Middelburg, J.J.; Meysman, F.J.R.; Boschker, H.T.S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. ISME J. 9(9): 1966-1978. dx.doi.org/10.1038/ismej.2015.10, meer
  • Peer reviewed article Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Nieuwenhuize, J.; Van Rijswijk, P.; Rochelle-Newall, E.J.; Navarro, N. (2004). Microbial uptake of dissolved organic and inorganic nitrogen in Randers Fjord. Est., Coast. and Shelf Sci. 61(3): 507-515
  • Peer reviewed article Veuger, B.; Middelburg, J.J.; Boschker, H.T.S.; Houtekamer, M. (2005). Analysis of 15N incorporation into D-alanine: a new method for tracing nitrogen uptake by bacteria. Limnol. Oceanogr., Methods 3: 230-240
  • Peer reviewed article Veuger, B.; van Oevelen, D.; Boschker, H.T.S.; Middelburg, J.J. (2006). Fate of peptidoglycan in an intertidal sediment: An in situ 13C-labeling study. Limnol. Oceanogr. 51(4): 1572-1580. hdl.handle.net/10.4319/lo.2006.51.4.1572
  • Peer reviewed article Veuger, B.; van Oevelen, D.; Middelburg, J.J. (2012). Fate of microbial nitrogen, carbon, hydrolysable amino acids, monosaccharides, and fatty acids in sediment. Geochim. Cosmochim. Acta 83: 217-233. https://dx.doi.org/10.1016/j.gca.2011.12.016, meer
  • Peer reviewed article Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785. dx.doi.org/10.5194/bg-10-1775-2013, meer
  • Peer reviewed article Veuger, B.; Middelburg, J.J. (2007). Incorporation of nitrogen from amino acids and urea by benthic microbes: role of bacteria versus algae and coupled incorporation of carbon. Aquat. Microb. Ecol. 48(1): 35-46. hdl.handle.net/10.3354/ame048035
  • Peer reviewed article Vos, M.; Vet, L.E.M.; Wäckers, F.L.; Middelburg, J.J.; van der Putten, W.H.; Mooij, W.M.; Heip, C.H.R.; Van Donk, E. (2006). Infochemicals structure marine, terrestrial and freshwater food webs: Implications for ecological informatics. Ecological Informatics 1(1): 23-32
  • Vos, M.; Soetaert, K.; Heip, C.; Middelburg, J.; Herman, P. (2008). Biodiversity, trait dynamics and ecosystem processes under gradual and catastrophic disturbance: a model analysis, in: World Conference on Marine Biodiversity, Valencia, Spain, 11-15 November 2008: book of abstracts. pp. 1
  • Peer reviewed article Widdows, J.; Blauw, A.; Heip, C.H.R.; Herman, P.M.J.; Lucas, C.H.; Middelburg, J.J.; Schmidt, S.; Brinsley, M.D.; Twisk, F.; Verbeek, H. (2004). Role of physical and biological processes in sediment dynamics of a tidal flat in Westerschelde Estuary, SW Netherlands. Mar. Ecol. Prog. Ser. 274: 41-56
  • Wijsman, J.W.M.; Middelburg, J.J.; Soetaert, K.; Herman, P.M.J. (2001). Benthic mineralization in marine environments, in: Wijsman, J.W.M. Early diagenetic processes in northwestern Black Sea sediments. NIOO Thesis, 8: pp. 7-21
  • Peer reviewed article Wijsman, J.W.M.; Middelburg, J.J.; Herman, P.M.J.; Böttcher, M.E.; Heip, C.H.R. (2001). Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea. Freshwat. Biol. 55(4): 67-85
  • Peer reviewed article Wijsman, J.W.M.; Middelburg, J.J.; Herman, P.M.J.; Böttcher, M.E.; Heip, C.H.R. (2001). Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea. Mar. Chem. 74(4): 261-278
  • Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K. (2001). A model for early diagenetic processes in sediments of the continental shelf of the Black Sea, in: Wijsman, J.W.M. Early diagenetic processes in northwestern Black Sea sediments. NIOO Thesis, 8: pp. 43-66
  • Peer reviewed article Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K. (2002). A model for early diagenetic processes in sediments of the continental shelf of the Black Sea. Est., Coast. and Shelf Sci. 54(3): 403-421
  • Peer reviewed article Wijsman, J.W.M.; Herman, P.M.J.; Middelburg, J.J.; Soetaert, K. (2002). A model for early diagenetic processes in sediments of the continental shelf of the Black Sea, in: European River Ocean Systems (EROS-21): interactions between the Danube and the north-western Black Sea. Estuarine, Coastal and Shelf Science, 54(3): pp. 403-421
  • Peer reviewed article Wijsman, J.W.M.; Middelburg, J.J.; Heip, C.H.R. (2001). Reactive iron in Black Sea sediments: implications for iron cycling. Mar. Geol. 172(3-4): 167-180
  • Peer reviewed article Wijsman, J.W.M.; Middelburg, J.J.; Heip, C.H.R. (2001). Reactive iron in Black Sea sediments: implications for iron cycling. Freshwat. Biol. 55(4): 85-96
  • Wolanski, E.; Mclusky, D.S.; Laane, R.W.P.; Middelburg, J.J. (Ed.) (2011). Treatise on Estuarine and Coastal Science: 5. Biogeochemistry. Elsevier: Amsterdam. ISBN 978-0-12-387745-1. 362 pp.
  • Peer reviewed article Woulds, C.; Middelburg, J.J.; Cowie, G.L. (2012). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part I: Amino acids. Geochim. Cosmochim. Acta 77: 396-414. dx.doi.org/10.1016/j.gca.2011.10.042, meer
  • Peer reviewed article Woulds, C.; Middelburg, J.J.; Cowie, G.L. (2014). Alteration of organic matter during infaunal polychaete gut passage and links to sediment organic geochemistry. Part II: Fatty acids and aldoses. Geochim. Cosmochim. Acta 136: 38-59. dx.doi.org/10.1016/j.gca.2014.02.013, meer
  • Peer reviewed article Woulds, C.; Bouillon, S.; Cowie, G.L.; Drake, E.; Middelburg, J.J.; Witte, U. (2016). Patterns of carbon processing at the seafloor: the role of faunal and microbial communities in moderating carbon flows. Biogeosciences 13(15): 4343-4357. https://dx.doi.org/10.5194/bg-2016-14, meer
  • Peer reviewed article Zonneveld, K.A.F.; Versteegh, G.J.M.; Kasten, S.; Eglinton, T.I.; Emeis, K.-C.; Huguet, C.; Koch, B.P.; de Lange, G.J.; de Leeuw, J.W.; Middelburg, J.J.; Mollenhauer, G.; Prahl, F.G.; Rethemeyer, J.; Wakeham, S.G. (2010). Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record. Biogeosciences 7(2): 483-511

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