Koninklijk Nederlands Instituut voor Onderzoek der Zee

Koppelle, S.; Ivankovic, M.; Bengtsson, M.M.; Preiler, C.; Huisman, J.; Brussaard, C.; Engelmann, J.C.; Ptacnik, R.; Wilken, S. (2024). Contrasting responses of different mixotrophic protists to light and nutrient availability. Limnol. Oceanogr. 69(5): 1233-1246. https://dx.doi.org/10.1002/lno.12565, meer
Yadav, S.; Koenen, M.; Bale, N.; Reitsma, W.; Engelmann, J.C.; Stefanova, K.; Sinninghe Damsté, J.S; Villanueva, L. (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. Microbiome 12(1): 98. https://dx.doi.org/10.1186/s40168-024-01816-x, meer
de Groot, T.; Mol, A.M.; Mesdag, K.I.; Ramond, P.; Ndhlovu, R.T.; Engelmann, J.C.; Röckmann, T.; Niemann, H. (2023). Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea. Biogeosciences 20(18): 3857-3872. https://dx.doi.org/10.5194/bg-20-3857-2023, meer
van Duyl, F.C.; van Bleijswijk, J.D.L.; Wuchter, C.; Witte, H.J.; Coolen, M.J.L.; Bak, R.P.M.; Engelmann, J.C.; Nugues, M.M. (2023). Recovery patterns of the coral microbiome after relief of algal contact. J. Sea Res. 191: 102309. https://dx.doi.org/10.1016/j.seares.2022.102309, meer
Sahonero Canavesi, D.X.; Siliakus, M.F.; Abdala Asbun, A.; Koenen, M.; von Meijenfeldt, F. A.B.; Boeren, S.; Bale, N.J.; Engelmann, J.C.; Fiege, K.; Strack van Schijndel, L.; Sinninghe Damsté, J.S.; Villanueva, L. (2022). Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in bacteria. Science Advances 8(50). https://dx.doi.org/10.1126/sciadv.abq8652, meer
Amaral-Zettler, L.A.; Ballerini, T.; Zettler, E.R.; Abdala Asbun, A.; Adame, A.; Casotti, R.; Dumontet, B.; Donnarumma, V.; Engelmann, J.C.; Frère, L.; Mansui, J.; Philippon, M.; Pietrelli, L.; Sighicelli, M. (2021). Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere. Environ. Pollut. 286: 117439. https://dx.doi.org/10.1016/j.envpol.2021.117439, meer
Linck-Paulus, L.; Lämmerhirt, L.; Völler, D.; Meyer, K.; Engelmann, J.C.; Spang, R.; Eichner, N.; Meister, G.; Kuphal, S.; Bosserhoff, A.K. (2021). Learning from embryogenesis: a comparative expression analysis in melanoblast differentiation and tumorigenesis reveals miRNAs driving melanoma development. Journal of Clinical Medicine 10(11): 2259. https://dx.doi.org/10.3390/jcm10112259, meer
Vaksmaa, A.; Knittel, K.; Abdala Asbun, A.; Goudriaan, M.; Ellrott, A.; Witte, H.J.; Vollmer, I.; Meirer, F.; Lott, C.; Weber, M.; Engelmann, J.C.; Niemann, H. (2021). Microbial communities on plastic polymers in the Mediterranean Sea. Front. Microbiol. 12: 673553. https://dx.doi.org/10.3389/fmicb.2021.673553, meer
Abdala Asbun, A.; Besseling, M.A.; Balzano, S.; van Bleijswijk, J.D.L.; Witte, H.J.; Villanueva, L.; Engelmann, J.C. (2020). Cascabel: A scalable and versatile amplicon sequence data analysis pipeline delivering reproducible and documented results. Frontiers in Genetics 11: 489357. https://doi.org/10.3389/fgene.2020.489357, meer
Arnold, J.; Engelmann, J.C.; Schneider, N.; Bosserhoff, A.K.; Kuphal, S. (2020). miR-488-5p and its role in melanoma. Experimental and Molecular Pathology 112: 104348. https://dx.doi.org/10.1016/j.yexmp.2019.104348, meer
van Grinsven, S.; Sinninghe Damsté, J.S; Abdala Asbun, A.; Engelmann, J.C.; Harrison, J.; Villanueva, L. (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. Environ. Microbiol. 22(2): 766-782. https://dx.doi.org/10.1111/1462-2920.14886, meer
Balzano, S.; Villanueva, L.; de Bar, M.; Sahonero Canavesi, D.X.; Yildiz, C.; Engelmann, J.C.; Maréchal, E.; Lupette, J.; Sinninghe Damsté, J.S.; Schouten, S. (2019). Biosynthesis of long chain alkyl diols and long chain alkenols in Nannochloropsis spp. (Eustigmatophyceae). Plant Cell Physiol. 60(8): 1666-1682. https://dx.doi.org/10.1093/pcp/pcz078, meer
Kleo, K.; Dimitrova, L.; Oker, E.; Tomaszewski, N.; Van den Bergh, E.; Taruttis, F.; Engelmann, J.C.; Schwarzfischer, P.; Reinders, J.; Spang, R.; Gronwald, W.; Oefner, P.J.; Hummel, M. (2019). Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma. Bmc Cancer 19(1). https://dx.doi.org/10.1186/s12885-019-5537-0, meer
Pérez-Rubio, P.; Lottaz, C.; Engelmann, J.C. (2019). FastqPuri: high-performance preprocessing of RNA-seq data. BMC Bioinformatics 20(1): 226. https://dx.doi.org/10.1186/s12859-019-2799-0, meer
Deeken, R.; Engelmann, J.C.; Efetova, M.; Czirjak, T.; Müller, T.; Kaiser, W.M.; Tietz, O.; Krischke, M.; Mueller, M.J.; Palme, K.; Dandekar, T.; Hedrich, R. (2006). An integrated view of gene expression and solute profiles of Arabidopsis tumors: A genome-wide approach. Plant Cell 18(12): 3617-3634. https://dx.doi.org/10.1105/tpc.106.044743, meer